Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03075 ATGGATTTTGAACCAGGAACATCGATCTTGCAAAATGGAGCCGTCAAAAGTTCGCCCAGGCACGCTCGAACGGCTCACAACATGTCATCGTCATCGTTGCGAAAAAAGTCCGATTTAACCCTCGTCTCCAAGGTTCGTTTTGGTTCCCTCAGACTATTTCTTGTAAATCTTCAAGAAGTCATTTTGGGAACCAGAATTTGGATTCTTTTTCCGGCCGTGCCGTTGGCTGTTTTGGCTAACTCTTTCGGCTTTGCAAGACCATGGGTTTTCGTTGTTAGCTTAATGGGTATTGCTCCACTTGCCGAACGCCTTAGCTTTCTGACCGAACAAATCTCATACTTCACAGGTCCTACAGTTGGTGGGTTGCTAAATGCGACGTGTGGCAATGCGACGGAATTAATCGTAGCAATTTTCGCACTAAGAAAAGGAAATATTAAGTTGGTGAAGTATTCTCTGTTGGGATCTCTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCACTCTTCTTTGGTGGCATTCTCAATATTAACAAACAACAGACCTTTGACTCCAGTCAAGCTGAGGTGAACTCGCACATGTTGATGTTGGCGCTTCAGTGCTACTTTCTACCCATGTTATTCCCTAACGTCGGAGGATCAGCTGACGAGGCAAGAGTTGGTGCGCTACGATTGTCTAGAGTTTGTAGTGTAGTAATGCTGGTTGCATATGTCGCTCACTTGATCTTTAATCTTTGGAGTAGTCATCGTCCATATTTTGAAGGAAACGAGGAATTGGACGAGTACAATGACGTAGTAGAAGAAGGTCCGGTGATGGGAAAATGGAGCGCCATGGCTTGGTTGGTGGTTATTACCCTTCTCGTGGCTTTGTTATCTGAGTACGTGGTCGCCACAATTGAGGATGCATCAGAAACTTGGGGTTTATCTGTTGCGTTCCTTAGCATAATCTTGCTATCATTAGTTGGAAATGCAGCTGAGCATGCAGGTGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATTACTTTAGGTGTTGCATTGGGATCTGCAAATCAAATAGGAATGTTTGTGGTTCCTTTGTGTGTAATTGTTGCTTGGATTATGGGAATAAATATGGATCTCAATTTTAATATTACCGAAACTGTCTCCCTTGCTCTCTCAATATTGGCTTCATCATCCATTTTACAGAATGGCAACTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTACATTGTGATTGCAACATATTTCTTCCTAACTACTGATGATGTTACTATCAACAATTTAGGGCTGCCCACCGTCCAACTAAAGCAACAATAG 1323 42.78 MDFEPGTSILQNGAVKSSPRHARTAHNMSSSSLRKKSDLTLVSKVRFGSLRLFLVNLQEVILGTRIWILFPAVPLAVLANSFGFARPWVFVVSLMGIAPLAERLSFLTEQISYFTGPTVGGLLNATCGNATELIVAIFALRKGNIKLVKYSLLGSLLSNLLLVLGTSLFFGGILNINKQQTFDSSQAEVNSHMLMLALQCYFLPMLFPNVGGSADEARVGALRLSRVCSVVMLVAYVAHLIFNLWSSHRPYFEGNEELDEYNDVVEEGPVMGKWSAMAWLVVITLLVALLSEYVVATIEDASETWGLSVAFLSIILLSLVGNAAEHAGAVIFAYKNKLDITLGVALGSANQIGMFVVPLCVIVAWIMGINMDLNFNITETVSLALSILASSSILQNGNSHYMKGLILLLFYIVIATYFFLTTDDVTINNLGLPTVQLKQQ* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28931882 28936611 + CsaV3_3G033810.1 Csa03g03075 523980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03075 440 TIGRFAM cax: calcium/proton exchanger 71 419 IPR004798 GO:0006816|GO:0015369
Csa03g03075 440 MobiDBLite consensus disorder prediction 10 31 - -
Csa03g03075 440 TIGRFAM caca2: calcium/proton exchanger 53 419 - -
Csa03g03075 440 MobiDBLite consensus disorder prediction 1 31 - -
Csa03g03075 440 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016021|GO:0055085
Csa03g03075 440 Pfam Sodium/calcium exchanger protein 277 419 IPR004837 GO:0016021|GO:0055085
Csa03g03075 440 Gene3D - 117 255 IPR044880 -
Csa03g03075 440 Gene3D - 264 421 IPR044880 -
Csa03g03075 440 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 19 431 IPR004713 GO:0006812|GO:0008324|GO:0016021
Csa03g03075 440 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 19 431 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03075 Csa04g01618 CCT
Csa03g03075 Csa04g01618 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02509 Csa-Chr1:22143541 Csa03g03075 Csa-Chr3:28931882 7.47E-135 dispersed
Csa03g02811 Csa-Chr3:26947129 Csa03g03075 Csa-Chr3:28931882 2.42E-103 dispersed
Csa03g03075 Csa-Chr3:28931882 Csa06g00979 Csa-Chr6:7944528 8.09E-115 dispersed
Csa03g03075 Csa-Chr3:28931882 Csa04g01618 Csa-Chr4:15535808 1.30E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03075 K07300 - csv:101213176 825.854