Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03082 ATGGCTCCTTGTTGCTTTGCAATCCTGAATTGCTGTAAAGGAAATAGCAGCACCGAGGAACCGGCAGAAGGGATTGCTGTTACCAACAATGTACGCATCTTTTCTTATAACTCCCTGAGGTCGGCAACTAGGAATTTTCATCCATCAAGCAGAATAGGCGCTGGAGGTTATGGAGTTGTCTACAAAGGAGTTTTAAGGGATGGCACCAATGTTGCAATCAAATCACTGTCTGCAGAATCAACTCAAGGAACTCGGGAATTCTTAACCGAGATAAATATGATATCAAATATAAGACATCAAAATCTCGTTCAACTGATTGGTTGTTGCATCGAAGGCACACATCGAATTTTGGTGTATGAATACCTGGAAAACAACAGCCTTGCGAGTACTTTGCTTGGTACAATGAGTAAACATGTTGATCTGGATTGGCCAAAGAGAGCTAAGATTTGTCTTGGTACAGCTTTGGGTCTTGCATTTCTACATGAGGATGCTGAACCGTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTGATCCTAAAATAGGAGACTTTGGGTTGGCTAAACTTTTCCCAGACAACGTTACTCATGTGAGCACTCGAGTTGCTGGAACTGTCGGATATTTGGCACCCGAGTATGCACTTTTAGGACAGTTGACAAAGAAAGCAGATGTATACAGTTTTGGTGTGCTCATGCTGGAAGTAGTTAGTGGAAGTAGCAGCAGTAAAACAGCATTCGGAGAAGAGTTATCGATTCTCGTGGAATGGACTTGGAAATTAAAACAAGAAGGACGGCTTGTAGAACTAATCGATCCGGAACTGATCGATTATCCGAAGGCCGAGGTTATGCGTTTCATCACGGTTGCACTCTTCTGTACCCAAGCCGCTGCAAATCAAAGGCCAAGCATGAAGCAAGTTGTGGAAATGCTTTCAAGAGAGGTACACCTTAACGAAAAACTTTTGACAGAGCCTGGAATATACAAAGGACACAAAATTAGTAAGTTAAATGGCGCTGGCACTAGTTCTGAGGGAACTTCCTCCCATGGACACAGAGGTAAAAAGGTTATAAAGTCTGCTACATCTTCGCCCCAATTTAATAGCTCAAATAGTATGACTCAAATGCTTCCTAGGTAA 1152 42.19 MAPCCFAILNCCKGNSSTEEPAEGIAVTNNVRIFSYNSLRSATRNFHPSSRIGAGGYGVVYKGVLRDGTNVAIKSLSAESTQGTREFLTEINMISNIRHQNLVQLIGCCIEGTHRILVYEYLENNSLASTLLGTMSKHVDLDWPKRAKICLGTALGLAFLHEDAEPSVVHRDIKASNILLDRNFDPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEVVSGSSSSKTAFGEELSILVEWTWKLKQEGRLVELIDPELIDYPKAEVMRFITVALFCTQAAANQRPSMKQVVEMLSREVHLNEKLLTEPGIYKGHKISKLNGAGTSSEGTSSHGHRGKKVIKSATSSPQFNSSNSMTQMLPR* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28958607 28962300 + CsaV3_3G033880.1 Csa03g03082 523987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03082 383 Pfam Protein tyrosine and serine/threonine kinase 50 316 IPR001245 GO:0004672|GO:0006468
Csa03g03082 383 MobiDBLite consensus disorder prediction 338 383 - -
Csa03g03082 383 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Csa03g03082 383 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Csa03g03082 383 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 378 - -
Csa03g03082 383 SUPERFAMILY Protein kinase-like (PK-like) 26 316 IPR011009 -
Csa03g03082 383 Gene3D Transferase(Phosphotransferase) domain 1 122 329 - -
Csa03g03082 383 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 378 - -
Csa03g03082 383 SMART serkin_6 46 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03082 383 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03082 383 MobiDBLite consensus disorder prediction 363 383 - -
Csa03g03082 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01213 Csa-Chr1:7524736 Csa03g03082 Csa-Chr3:28958607 5.48E-151 dispersed
Csa03g03082 Csa-Chr3:28958607 Csa04g00762 Csa-Chr4:5235626 1.33E-122 dispersed
Csa03g03082 Csa-Chr3:28958607 Csa04g00800 Csa-Chr4:5599656 3.07E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78034 PF07714 PK_Tyr_Ser-Thr 2.40E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03082 - - csv:101218048 748.814