Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03085 ATGACCGACAATTCAATTCTGCTTATCCCTGTGCGTAAACTGAGGGATTGGGCATTTGTTTTCACTGCAGATTCGGAATTTCTCAGCTGCAGGATGAGGCAGAATTATTGCTTTAACACCAACAGGATTCTGCGTATACTTCTTTATCATTTCTTTTTTATATCCATGAGCTTGGCCTTTGCGAAGACACCCATATCTGGAATTGAATCAGATCATTTGGCTCTACTTGATCTGAAAAGTAGAGTACTCAACGACCCACTCAAAATCATGAGCTCTTGGAACGATTCCAGGCATTTATGTGATTGGACTGGCATTACTTGTAATTCCACCATTGGAAGAGTTATGGTCTTGGACTTGGAAGCTCACAAACTGAGTGGTTCGATACCAAATTCTTTAGGAAATATGACTCATCTCATTGCAATTAGATTGGGAGACAACAGACTCCACGGCCATATTCCTCAAGAATTTGGTCAGCTACTACAATTACGTCATCTCAATTTGTCCTACAATAACTTCAGTGGCGAGATTCCAGGAAATATAAGTCATTGCACCCAGCTGGTTCATTTGGAGTTGGGCAACAATGGGCTTGAAGGTCAGATTCCACACCAGTTGTTCACGTTAACCAAGTTGAAACGACTCAGTTTTCCCAATAACAATTTGATTGGAACTATCCCATCTTGGATAGGAAACTTTTCTTCCCTCCTTCATTTATCAGTCGCGTATAACAATTTTCAAGGAAACATTCCCAACGAACTGGGGCACTTGAGAAGATTGGAGTTCTTTGCAATTACAGCAAACTATTTGACAGGTACAGTGCCACTTTCACTCTATAATATAACTTCTTTGACTTTGATGAGTCTTACTGCAAATCGACTTCAAGGAACTCTACCACCAAATATCGGATATACACTACCCAATCTTCAGATCTTTGTTGGTGGCGGCAATAATTTCACAGGGTCTATTCCCACGTCGTTTGCCAACATCTCCGGTCTTCGAGAATTAGATCTTCCTAGTAACAGTTTCGTTGGAATGCTACCTAATGATTTGGGGAGCTTAAAAGACTTAGAGAGACTCAATTTTGAAGACAACATACTTGGAACTGGAAGAGTTGGTGACTTAAATTTTATCAGCTCCTTGGCTAATTGTACTAGTCTAAAGGTTTTGGGTCTGTCATGGAATCATTTTGGAGGAGTATTGCCTTCATCTATTGGCAACCTATCAAGCCAGCTCACAGCGTTAACCTTGGGTGCAAATATGTTAAGTGGAAGCATTCCTTCTGCGATTGCAAACCTGATTAACTTGCAACATCTAGTGGTGGGACAGAATTATTTGAATGGAAGTGTTCCTCCTAATATTGGGAATCTTCAAAACTTGGTGAAGCTATTTTTGCAAGGTAACAATTTAACTGGGCCAATTCCATCATCTATTGGTAACTTGTCTTCGATAGTTAAGCTTTACATGAACGATAACAGACTTGAAGGAAGCATACCAAGAAGCTTGGGACGTTGCAAAACGCTTCAAATTCTTAACCTATCTGGTAACAAACTTAGTGGCCTTATACCAAATGAAGTTCTTCATTTCTCTTCCTTTTTGGCCTATTTGGCCTTGAATAATAACTCACTTACTGGTCCATTAGCACTTGAAGTGGATGAGGTGGTTAGTTTGATAACGTTGGATGTATCAAAGAACAAATTATCAGGTAACATTTCTAGCAATCTTGGTAAATGTGTAAGCATGCGTTACTTGGATTTGAGTGGTAACCAATTTGAGGGAACAATTCCTCAATCTTTAGAAACTTTGAAAAGTCTTGAAGTACTAAATCTTTCCAGTAACAACTTGTCTGGGTCAATTCCCCAATTTCTTGGTCAGCTTCACTCACTCAAGTATGTCAATCTATCCTATAATGACTTTGAGGGGAAAGTGCCAACAGATGGAATTTTTTCCAATTCAACCATGATTTCTATCATTGGAAATAATGATCTATGTGATGGTTTACAAGAATTAAGTTTACCTCCGTGCAAGCCTAACCAAACACATTTGCCCGATAAGCGGTCTCTAACATCAAAGGTGTTGATCCCTGTAGTATCTACCGTCACATTCATTGTTATTTTGGTGAGCATACTTTTCGTGTGTTTTGTGTTTAAGAAGTCCAGGAAGGATAATTCAACTCCATCTTCTACAAAGGAGCTTCTACCACAAATTTCTTATTTAGAACTGAACAAATCAACTAACGGATTCTCTATGGACAATTTGATTGGTTCGGGTAGTTTTGGCTCTGTGTATAAAGGTGTTCTTCCAAATGGTGGATCTATTGTTGCCGTTAAGGTTCTAAACCTCCAACAACAAGGTGCTTCCAAGAGTTTTATTGATGAATGCAACACTCTCTCAAACATACGGCATCGGAATCTCCTCAAGAACATAACTTCTTGCTCAAGTATTGATGTACAAGGCAACGAATTCAAAGCATTAGTCTTCAATTTCATGTCCAAGGGAAATCTTGATTGTTGGCTTCATCCTGCAAATCAAGGACACGATCAAAGAAGGTTGAGTCTCCTCCAAAGATTGAATATTGCTATTGATATAGCATGTGGATTAGATTATCTTCATAATCTTTGTGAAATTCCTATTGTTCATTGCGATCTAAAGCCTAGCAATATATTGCTTGACGACGATATGGTAGCTCATGTAGGAGACTTTGGGTTAGCTAGATACATGTTGGAAGGACCGAATGCACCATTATCTTTTAGTCAAACCATGTCACTTGCACTCAAGGGTTCTATAGGGTATATTCCTCCAGAATACGGCACTGGTAGCAGAATTTCCATCGAAGGAGATGTCTTCAGCTATGGTATACTACTATTAGAGATGCTCATCGGAAAAAGACCCACTGACGACACATTTGGTCATGGTGTGGACATTCATTTGTTCGCTACCATGGAGCTATCTCGAGATGCCTTGGGCATAATCGATCATTCTATGCTATTAGTAGAAACAGATCAAAAAGAAGAAAGAGAAGACAATATACAAGAAATAGCGACAATGAGTGAGGAACAACACAGAAAAATCATACCGAGATATGTGGAAGAATGTCTAGTATCAATGATGAGAATCGGATTGTCATGCTCCTTGAGGGCACCTAGGGAGAGAACACCGATGAATGTGATCGTTAATGAATTGCAAGCAATTAAAAGCTCCTATCTCAAATTTAAAAAGACACGCCAGAGGTAA 3228 39.22 MTDNSILLIPVRKLRDWAFVFTADSEFLSCRMRQNYCFNTNRILRILLYHFFFISMSLAFAKTPISGIESDHLALLDLKSRVLNDPLKIMSSWNDSRHLCDWTGITCNSTIGRVMVLDLEAHKLSGSIPNSLGNMTHLIAIRLGDNRLHGHIPQEFGQLLQLRHLNLSYNNFSGEIPGNISHCTQLVHLELGNNGLEGQIPHQLFTLTKLKRLSFPNNNLIGTIPSWIGNFSSLLHLSVAYNNFQGNIPNELGHLRRLEFFAITANYLTGTVPLSLYNITSLTLMSLTANRLQGTLPPNIGYTLPNLQIFVGGGNNFTGSIPTSFANISGLRELDLPSNSFVGMLPNDLGSLKDLERLNFEDNILGTGRVGDLNFISSLANCTSLKVLGLSWNHFGGVLPSSIGNLSSQLTALTLGANMLSGSIPSAIANLINLQHLVVGQNYLNGSVPPNIGNLQNLVKLFLQGNNLTGPIPSSIGNLSSIVKLYMNDNRLEGSIPRSLGRCKTLQILNLSGNKLSGLIPNEVLHFSSFLAYLALNNNSLTGPLALEVDEVVSLITLDVSKNKLSGNISSNLGKCVSMRYLDLSGNQFEGTIPQSLETLKSLEVLNLSSNNLSGSIPQFLGQLHSLKYVNLSYNDFEGKVPTDGIFSNSTMISIIGNNDLCDGLQELSLPPCKPNQTHLPDKRSLTSKVLIPVVSTVTFIVILVSILFVCFVFKKSRKDNSTPSSTKELLPQISYLELNKSTNGFSMDNLIGSGSFGSVYKGVLPNGGSIVAVKVLNLQQQGASKSFIDECNTLSNIRHRNLLKNITSCSSIDVQGNEFKALVFNFMSKGNLDCWLHPANQGHDQRRLSLLQRLNIAIDIACGLDYLHNLCEIPIVHCDLKPSNILLDDDMVAHVGDFGLARYMLEGPNAPLSFSQTMSLALKGSIGYIPPEYGTGSRISIEGDVFSYGILLLEMLIGKRPTDDTFGHGVDIHLFATMELSRDALGIIDHSMLLVETDQKEEREDNIQEIATMSEEQHRKIIPRYVEECLVSMMRIGLSCSLRAPRERTPMNVIVNELQAIKSSYLKFKKTRQR* 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28968635 28972295 - CsaV3_3G033910.1 Csa03g03085 523990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03085 1075 ProSiteProfiles Leucine-rich repeat profile. 505 526 IPR001611 GO:0005515
Csa03g03085 1075 SUPERFAMILY L domain-like 408 663 - -
Csa03g03085 1075 Gene3D Transferase(Phosphotransferase) domain 1 828 1074 - -
Csa03g03085 1075 Pfam Leucine Rich repeat 381 397 IPR001611 GO:0005515
Csa03g03085 1075 Gene3D Ribonuclease Inhibitor 221 372 IPR032675 -
Csa03g03085 1075 ProSiteProfiles Protein kinase domain profile. 746 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03085 1075 Pfam Leucine Rich Repeat 161 183 IPR001611 GO:0005515
Csa03g03085 1075 ProSiteProfiles Leucine-rich repeat profile. 602 624 IPR001611 GO:0005515
Csa03g03085 1075 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 68 1063 - -
Csa03g03085 1075 Pfam Protein kinase domain 748 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03085 1075 Gene3D Ribonuclease Inhibitor 70 220 IPR032675 -
Csa03g03085 1075 SUPERFAMILY Protein kinase-like (PK-like) 718 1059 IPR011009 -
Csa03g03085 1075 SUPERFAMILY L domain-like 69 364 - -
Csa03g03085 1075 PRINTS Leucine-rich repeat signature 506 519 - -
Csa03g03085 1075 PRINTS Leucine-rich repeat signature 600 613 - -
Csa03g03085 1075 Gene3D Ribonuclease Inhibitor 373 677 IPR032675 -
Csa03g03085 1075 Pfam Leucine rich repeat N-terminal domain 69 108 IPR013210 -
Csa03g03085 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 876 888 IPR008271 GO:0004672|GO:0006468
Csa03g03085 1075 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 68 1063 - -
Csa03g03085 1075 SMART LRR_typ_2 431 455 IPR003591 -
Csa03g03085 1075 SMART LRR_typ_2 600 624 IPR003591 -
Csa03g03085 1075 SMART LRR_typ_2 479 503 IPR003591 -
Csa03g03085 1075 SMART LRR_typ_2 159 183 IPR003591 -
Csa03g03085 1075 SMART LRR_typ_2 207 231 IPR003591 -
Csa03g03085 1075 Pfam Leucine rich repeat 579 637 IPR001611 GO:0005515
Csa03g03085 1075 Pfam Leucine rich repeat 457 516 IPR001611 GO:0005515
Csa03g03085 1075 SMART serkin_6 746 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03085 1075 ProSitePatterns Protein kinases ATP-binding region signature. 752 775 IPR017441 GO:0005524
Csa03g03085 1075 Gene3D Phosphorylase Kinase; domain 1 710 827 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02313 Csa-Chr1:20220984 Csa03g03085 Csa-Chr3:28968635 5.33E-17 dispersed
Csa03g03085 Csa-Chr3:28968635 Csa03g03088 Csa-Chr3:28981023 0 dispersed
Csa03g03087 Csa-Chr3:28980155 Csa03g03085 Csa-Chr3:28968635 4.28E-120 dispersed
Csa03g03089 Csa-Chr3:28985831 Csa03g03085 Csa-Chr3:28968635 1.00E-80 dispersed
Csa03g03085 Csa-Chr3:28968635 Csa03g03086 Csa-Chr3:28973483 0 tandem
Csa01g01928 Csa-Chr1:16130248 Csa03g03085 Csa-Chr3:28968635 3.53E-08 transposed
Csa03g02964 Csa-Chr3:28208482 Csa03g03085 Csa-Chr3:28968635 2.91E-169 transposed
Csa03g03161 Csa-Chr3:29321993 Csa03g03085 Csa-Chr3:28968635 2.37E-10 transposed
Csa03g03085 Csa-Chr3:28968635 Csa06g00178 Csa-Chr6:1196284 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78035 PF00069 Pkinase 9.30E-38 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03085 - - csv:101218525 2121.67