Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03085 | ATGACCGACAATTCAATTCTGCTTATCCCTGTGCGTAAACTGAGGGATTGGGCATTTGTTTTCACTGCAGATTCGGAATTTCTCAGCTGCAGGATGAGGCAGAATTATTGCTTTAACACCAACAGGATTCTGCGTATACTTCTTTATCATTTCTTTTTTATATCCATGAGCTTGGCCTTTGCGAAGACACCCATATCTGGAATTGAATCAGATCATTTGGCTCTACTTGATCTGAAAAGTAGAGTACTCAACGACCCACTCAAAATCATGAGCTCTTGGAACGATTCCAGGCATTTATGTGATTGGACTGGCATTACTTGTAATTCCACCATTGGAAGAGTTATGGTCTTGGACTTGGAAGCTCACAAACTGAGTGGTTCGATACCAAATTCTTTAGGAAATATGACTCATCTCATTGCAATTAGATTGGGAGACAACAGACTCCACGGCCATATTCCTCAAGAATTTGGTCAGCTACTACAATTACGTCATCTCAATTTGTCCTACAATAACTTCAGTGGCGAGATTCCAGGAAATATAAGTCATTGCACCCAGCTGGTTCATTTGGAGTTGGGCAACAATGGGCTTGAAGGTCAGATTCCACACCAGTTGTTCACGTTAACCAAGTTGAAACGACTCAGTTTTCCCAATAACAATTTGATTGGAACTATCCCATCTTGGATAGGAAACTTTTCTTCCCTCCTTCATTTATCAGTCGCGTATAACAATTTTCAAGGAAACATTCCCAACGAACTGGGGCACTTGAGAAGATTGGAGTTCTTTGCAATTACAGCAAACTATTTGACAGGTACAGTGCCACTTTCACTCTATAATATAACTTCTTTGACTTTGATGAGTCTTACTGCAAATCGACTTCAAGGAACTCTACCACCAAATATCGGATATACACTACCCAATCTTCAGATCTTTGTTGGTGGCGGCAATAATTTCACAGGGTCTATTCCCACGTCGTTTGCCAACATCTCCGGTCTTCGAGAATTAGATCTTCCTAGTAACAGTTTCGTTGGAATGCTACCTAATGATTTGGGGAGCTTAAAAGACTTAGAGAGACTCAATTTTGAAGACAACATACTTGGAACTGGAAGAGTTGGTGACTTAAATTTTATCAGCTCCTTGGCTAATTGTACTAGTCTAAAGGTTTTGGGTCTGTCATGGAATCATTTTGGAGGAGTATTGCCTTCATCTATTGGCAACCTATCAAGCCAGCTCACAGCGTTAACCTTGGGTGCAAATATGTTAAGTGGAAGCATTCCTTCTGCGATTGCAAACCTGATTAACTTGCAACATCTAGTGGTGGGACAGAATTATTTGAATGGAAGTGTTCCTCCTAATATTGGGAATCTTCAAAACTTGGTGAAGCTATTTTTGCAAGGTAACAATTTAACTGGGCCAATTCCATCATCTATTGGTAACTTGTCTTCGATAGTTAAGCTTTACATGAACGATAACAGACTTGAAGGAAGCATACCAAGAAGCTTGGGACGTTGCAAAACGCTTCAAATTCTTAACCTATCTGGTAACAAACTTAGTGGCCTTATACCAAATGAAGTTCTTCATTTCTCTTCCTTTTTGGCCTATTTGGCCTTGAATAATAACTCACTTACTGGTCCATTAGCACTTGAAGTGGATGAGGTGGTTAGTTTGATAACGTTGGATGTATCAAAGAACAAATTATCAGGTAACATTTCTAGCAATCTTGGTAAATGTGTAAGCATGCGTTACTTGGATTTGAGTGGTAACCAATTTGAGGGAACAATTCCTCAATCTTTAGAAACTTTGAAAAGTCTTGAAGTACTAAATCTTTCCAGTAACAACTTGTCTGGGTCAATTCCCCAATTTCTTGGTCAGCTTCACTCACTCAAGTATGTCAATCTATCCTATAATGACTTTGAGGGGAAAGTGCCAACAGATGGAATTTTTTCCAATTCAACCATGATTTCTATCATTGGAAATAATGATCTATGTGATGGTTTACAAGAATTAAGTTTACCTCCGTGCAAGCCTAACCAAACACATTTGCCCGATAAGCGGTCTCTAACATCAAAGGTGTTGATCCCTGTAGTATCTACCGTCACATTCATTGTTATTTTGGTGAGCATACTTTTCGTGTGTTTTGTGTTTAAGAAGTCCAGGAAGGATAATTCAACTCCATCTTCTACAAAGGAGCTTCTACCACAAATTTCTTATTTAGAACTGAACAAATCAACTAACGGATTCTCTATGGACAATTTGATTGGTTCGGGTAGTTTTGGCTCTGTGTATAAAGGTGTTCTTCCAAATGGTGGATCTATTGTTGCCGTTAAGGTTCTAAACCTCCAACAACAAGGTGCTTCCAAGAGTTTTATTGATGAATGCAACACTCTCTCAAACATACGGCATCGGAATCTCCTCAAGAACATAACTTCTTGCTCAAGTATTGATGTACAAGGCAACGAATTCAAAGCATTAGTCTTCAATTTCATGTCCAAGGGAAATCTTGATTGTTGGCTTCATCCTGCAAATCAAGGACACGATCAAAGAAGGTTGAGTCTCCTCCAAAGATTGAATATTGCTATTGATATAGCATGTGGATTAGATTATCTTCATAATCTTTGTGAAATTCCTATTGTTCATTGCGATCTAAAGCCTAGCAATATATTGCTTGACGACGATATGGTAGCTCATGTAGGAGACTTTGGGTTAGCTAGATACATGTTGGAAGGACCGAATGCACCATTATCTTTTAGTCAAACCATGTCACTTGCACTCAAGGGTTCTATAGGGTATATTCCTCCAGAATACGGCACTGGTAGCAGAATTTCCATCGAAGGAGATGTCTTCAGCTATGGTATACTACTATTAGAGATGCTCATCGGAAAAAGACCCACTGACGACACATTTGGTCATGGTGTGGACATTCATTTGTTCGCTACCATGGAGCTATCTCGAGATGCCTTGGGCATAATCGATCATTCTATGCTATTAGTAGAAACAGATCAAAAAGAAGAAAGAGAAGACAATATACAAGAAATAGCGACAATGAGTGAGGAACAACACAGAAAAATCATACCGAGATATGTGGAAGAATGTCTAGTATCAATGATGAGAATCGGATTGTCATGCTCCTTGAGGGCACCTAGGGAGAGAACACCGATGAATGTGATCGTTAATGAATTGCAAGCAATTAAAAGCTCCTATCTCAAATTTAAAAAGACACGCCAGAGGTAA | 3228 | 39.22 | MTDNSILLIPVRKLRDWAFVFTADSEFLSCRMRQNYCFNTNRILRILLYHFFFISMSLAFAKTPISGIESDHLALLDLKSRVLNDPLKIMSSWNDSRHLCDWTGITCNSTIGRVMVLDLEAHKLSGSIPNSLGNMTHLIAIRLGDNRLHGHIPQEFGQLLQLRHLNLSYNNFSGEIPGNISHCTQLVHLELGNNGLEGQIPHQLFTLTKLKRLSFPNNNLIGTIPSWIGNFSSLLHLSVAYNNFQGNIPNELGHLRRLEFFAITANYLTGTVPLSLYNITSLTLMSLTANRLQGTLPPNIGYTLPNLQIFVGGGNNFTGSIPTSFANISGLRELDLPSNSFVGMLPNDLGSLKDLERLNFEDNILGTGRVGDLNFISSLANCTSLKVLGLSWNHFGGVLPSSIGNLSSQLTALTLGANMLSGSIPSAIANLINLQHLVVGQNYLNGSVPPNIGNLQNLVKLFLQGNNLTGPIPSSIGNLSSIVKLYMNDNRLEGSIPRSLGRCKTLQILNLSGNKLSGLIPNEVLHFSSFLAYLALNNNSLTGPLALEVDEVVSLITLDVSKNKLSGNISSNLGKCVSMRYLDLSGNQFEGTIPQSLETLKSLEVLNLSSNNLSGSIPQFLGQLHSLKYVNLSYNDFEGKVPTDGIFSNSTMISIIGNNDLCDGLQELSLPPCKPNQTHLPDKRSLTSKVLIPVVSTVTFIVILVSILFVCFVFKKSRKDNSTPSSTKELLPQISYLELNKSTNGFSMDNLIGSGSFGSVYKGVLPNGGSIVAVKVLNLQQQGASKSFIDECNTLSNIRHRNLLKNITSCSSIDVQGNEFKALVFNFMSKGNLDCWLHPANQGHDQRRLSLLQRLNIAIDIACGLDYLHNLCEIPIVHCDLKPSNILLDDDMVAHVGDFGLARYMLEGPNAPLSFSQTMSLALKGSIGYIPPEYGTGSRISIEGDVFSYGILLLEMLIGKRPTDDTFGHGVDIHLFATMELSRDALGIIDHSMLLVETDQKEEREDNIQEIATMSEEQHRKIIPRYVEECLVSMMRIGLSCSLRAPRERTPMNVIVNELQAIKSSYLKFKKTRQR* | 1076 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28968635 | 28972295 | - | CsaV3_3G033910.1 | Csa03g03085 | 523990 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03085 | 1075 | ProSiteProfiles | Leucine-rich repeat profile. | 505 | 526 | IPR001611 | GO:0005515 | |
Csa03g03085 | 1075 | SUPERFAMILY | L domain-like | 408 | 663 | - | - | |
Csa03g03085 | 1075 | Gene3D | Transferase(Phosphotransferase) domain 1 | 828 | 1074 | - | - | |
Csa03g03085 | 1075 | Pfam | Leucine Rich repeat | 381 | 397 | IPR001611 | GO:0005515 | |
Csa03g03085 | 1075 | Gene3D | Ribonuclease Inhibitor | 221 | 372 | IPR032675 | - | |
Csa03g03085 | 1075 | ProSiteProfiles | Protein kinase domain profile. | 746 | 1067 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03085 | 1075 | Pfam | Leucine Rich Repeat | 161 | 183 | IPR001611 | GO:0005515 | |
Csa03g03085 | 1075 | ProSiteProfiles | Leucine-rich repeat profile. | 602 | 624 | IPR001611 | GO:0005515 | |
Csa03g03085 | 1075 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 68 | 1063 | - | - | |
Csa03g03085 | 1075 | Pfam | Protein kinase domain | 748 | 987 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03085 | 1075 | Gene3D | Ribonuclease Inhibitor | 70 | 220 | IPR032675 | - | |
Csa03g03085 | 1075 | SUPERFAMILY | Protein kinase-like (PK-like) | 718 | 1059 | IPR011009 | - | |
Csa03g03085 | 1075 | SUPERFAMILY | L domain-like | 69 | 364 | - | - | |
Csa03g03085 | 1075 | PRINTS | Leucine-rich repeat signature | 506 | 519 | - | - | |
Csa03g03085 | 1075 | PRINTS | Leucine-rich repeat signature | 600 | 613 | - | - | |
Csa03g03085 | 1075 | Gene3D | Ribonuclease Inhibitor | 373 | 677 | IPR032675 | - | |
Csa03g03085 | 1075 | Pfam | Leucine rich repeat N-terminal domain | 69 | 108 | IPR013210 | - | |
Csa03g03085 | 1075 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 876 | 888 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g03085 | 1075 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED | 68 | 1063 | - | - | |
Csa03g03085 | 1075 | SMART | LRR_typ_2 | 431 | 455 | IPR003591 | - | |
Csa03g03085 | 1075 | SMART | LRR_typ_2 | 600 | 624 | IPR003591 | - | |
Csa03g03085 | 1075 | SMART | LRR_typ_2 | 479 | 503 | IPR003591 | - | |
Csa03g03085 | 1075 | SMART | LRR_typ_2 | 159 | 183 | IPR003591 | - | |
Csa03g03085 | 1075 | SMART | LRR_typ_2 | 207 | 231 | IPR003591 | - | |
Csa03g03085 | 1075 | Pfam | Leucine rich repeat | 579 | 637 | IPR001611 | GO:0005515 | |
Csa03g03085 | 1075 | Pfam | Leucine rich repeat | 457 | 516 | IPR001611 | GO:0005515 | |
Csa03g03085 | 1075 | SMART | serkin_6 | 746 | 1067 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03085 | 1075 | ProSitePatterns | Protein kinases ATP-binding region signature. | 752 | 775 | IPR017441 | GO:0005524 | |
Csa03g03085 | 1075 | Gene3D | Phosphorylase Kinase; domain 1 | 710 | 827 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02313 | Csa-Chr1:20220984 | Csa03g03085 | Csa-Chr3:28968635 | 5.33E-17 | dispersed | |
Csa03g03085 | Csa-Chr3:28968635 | Csa03g03088 | Csa-Chr3:28981023 | 0 | dispersed | |
Csa03g03087 | Csa-Chr3:28980155 | Csa03g03085 | Csa-Chr3:28968635 | 4.28E-120 | dispersed | |
Csa03g03089 | Csa-Chr3:28985831 | Csa03g03085 | Csa-Chr3:28968635 | 1.00E-80 | dispersed | |
Csa03g03085 | Csa-Chr3:28968635 | Csa03g03086 | Csa-Chr3:28973483 | 0 | tandem | |
Csa01g01928 | Csa-Chr1:16130248 | Csa03g03085 | Csa-Chr3:28968635 | 3.53E-08 | transposed | |
Csa03g02964 | Csa-Chr3:28208482 | Csa03g03085 | Csa-Chr3:28968635 | 2.91E-169 | transposed | |
Csa03g03161 | Csa-Chr3:29321993 | Csa03g03085 | Csa-Chr3:28968635 | 2.37E-10 | transposed | |
Csa03g03085 | Csa-Chr3:28968635 | Csa06g00178 | Csa-Chr6:1196284 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78035 | PF00069 | Pkinase | 9.30E-38 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03085 | - | - | csv:101218525 | 2121.67 |