Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g03086 | ATGGGACGCAATTTATGCAATAGCAACAAAATTTTTAGCATACTTTTGTACCATATATTTCTCATATCTGTGAGCTCCACTTCCGCAAATGAACCAGATCGATTGGCTCTTCTTGACTTGAAAAGCAGAGTACTCAAAGACCCACTTGGAATCCTGAGCTCTTGGAACGATTCCGCACATTTTTGCGATTGGATTGGTGTTGCTTGCAATTCCACCAGCAGAAGAGTAGTAGCTTTGAACTTGGAATCTCAAAAACTAACTGGTTCGATACCGCCTTCTTTGGGGAATATGACGTATCTCACTAAAATCAATTTGGGAGACAACAATTTTCATGGTCATATTCCCCAGGCGTTTGGTAAGCTACTACAACTGCGCCTTCTTAATTTGTCCTTGAATCAATTTACTGGTGAGATTCCGACAAATATAAGTCATTGCACTCAGCTTGTTTTTCTCCAGTTTGGTGGGAATAGGTTTGAAGGTCAGATTCCACATCAGTTCTTCACTTTAACCAAGTTGGAAGGTCTTGGATTTGGCATTAACAATCTCACTGGAAGAATCCCACCGTGGATAGGAAATTTTACTTCGATATTAGGTATGTCATTCGGGTACAACAATTTTCAAGGAAATATTCCTAGTGAAATAGGACGCCTATCTAGATTGAAAAGACTTGTAGTTGTTTCTAATAATTTGACAGGTCCAGTGTGGCCTTCAATCTGTAATATAACTTCTCTAACTTACTTGTCTCTTGCTGACAACCAATTGCAAGGAACTCTACCACCTAATATTGGATTTACTCTTCCTAATCTTCAAGCCTTAGGCGGTGGAGTCAATAATTTCCATGGGCCTATTCCAAAGTCTTTGGCTAATATTTCCGGACTTCAAATCTTAGATTTTCCTCAGAACAAACTTGTTGGAATGCTACCTGATGACATGGGGAGATTAAAATACTTGGAGCATCTAAATTTTGCATCTAATAGACTTGGAAGAGGAAAAGTTGGTGACTTAAATTTTATTAGTTACTTGGCTAATTGTACAAGCCTAAGGATTTTAAGTTTGAGTTCGAACCATTTTGGAGGAGTATTGCCTTCGTCTATTGGCAACCTTTCAACCCAGATGAGAAGTCTAGTTTTAGGTCAAAATATGTTAAGTGGAAGCATTCCTACAGGGATTGGAAACTTGATTAACTTACAACGCCTAGCAATGGAAGTTAACTTTTTGAATGGCAGTATTCCTCCCAATATAGGAAAGCTTAAAAACTTGGAGGTTTTGTACTTGAATTATAATGAATTAAGTGGGCCAGTCCCTTCCTCTATTGCTAACTTATCTTCACTAACCAAGCTCTACATGAGTCACAACAAACTTAAGGAAAGTATTCCAGCCGGCTTAGGACAATGTGAAAGCCTCTTAACTCTTGAGCTATCTAGTAACAACCTAAGCGGCACCATACCGAAGGAAATACTTTATCTCTCTTCCCTTTCGATGTCTTTAGCCTTGGATCATAACTCTTTTACTGGTCCATTGCCCCATGAAGTGGGGTTGTTGGTTCGTTTATCAAAACTAGACGTATCAGAAAACCAATTATCAGGTGATATTCCTACCAACCTCGAAAACTGTATTAGAATGGAACGTTTGAATCTTGGGGGTAACCAATTTGAGGGAACAATTCCTGAATCTTTAGGAGCTTTGAAAGGAATAGAAGAATTGAATCTCTCCAGCAACAACTTGTCTGGGAAAATTCCTCAATTTCTTGGCAAGCTTGGCTCACTCAAGTATCTCAACCTATCCTATAATAACTTTGAGGGACAAGTGCCAAAAGAAGGTGTTTTCTCCAATTCAACTATGATTTCAGTCATTGGGAATAACAATCTATGTGGCGGTTTACCAGAATTACATTTACCTCCATGCAAGTATGATCGAACATATTCCCGTAAGAAGTTTATGGCACCAAGGGTGTTAATCCCCATTGCATCTACAGTCACCTTCCTTGTTATTTTGGTAAGCATCATTTTTGTGTGTTTTGTGCTTAGAAAATCGAAGAAGGATGCTTCAACTAATTCATCTTCCACGAAGGAGTTTCTACCACAAATTTCTTACCTGGAACTTAGTAAATCAACTAACGGGTTCTCTAAGGAAAATTTCATTGGTTCGGGTAGTTTTGGCTCTGTGTATAAAGGTATTCTTTCGAGTGATGGGTCTATTGTTGCCATTAAGGTTCTAAATCTCCAACACCAAGGAGCTTCTAAAAGTTTTGTTGATGAATGCAATGCCCTCTCAAACATACGACATCGAAATCTCCTCAAGATCATAACTTCTTGCTCAAGCATTGATGTACAAGGGAATGAATTTAAAGCTTTAATCTTTAATTTCATGTCCAATGGAAATCTTGATTGTTTGCTTCATCCCACAAACAAACAGAACAATCAAAGAAGGTTAAGCCTCATCCAGAGATTGAACATTGCTATTGACATCGCATATGGATTAGACTATCTCCATAATCATTGTGAACCTCCAATTGCTCATTGTGATCTAAAGCCTAGCAATATATTGCTCGACGACGATATGGTAGCTCATGTAGGAGACTTTGGGTTAGCTAGATTCATGTTGGAAGGGTCAAATGATCAAACATCTTTAAGTCAAACCATGTCACTTGCACTCAAGGGTTCTATCGGATATATCCCTCCAGAATACGGCACAGGTGGAAGAATTTCCACTGAAGGGGATGTATTTAGTTACGGAATACTACTATTAGAGATGATCATTGGAAAAAGACCTACCGATGAGAAGTTCGGCGACAGTGTGGATATTCATTTGTTTACTGAAATGGCCTTATCTCAAGGGGTCATAAATATAGTTGACCCTTCTCTCCTATATGAAGAAACAGGAGAAACAAATCAGGAAGGAAAGAGTGAAGATAAAACACAAGAAATAGCAGTGATGAGTGAGGAAGATCATAAAGGATTTGTGCTAAGTTGGATGGAAGAATGTATAATCTCAATCTTGAGAATCGGCTTGTCATGCTCCTTAAGGATGCCTAGAGAGAGAAAGCCAATAAATGTTGTCATTAATGAATTACAAACAATTAAAAGCTCCTACCTCAAGTTTAAGAAGAGATGGAGGATACCGTAG | 3126 | 38.48 | MGRNLCNSNKIFSILLYHIFLISVSSTSANEPDRLALLDLKSRVLKDPLGILSSWNDSAHFCDWIGVACNSTSRRVVALNLESQKLTGSIPPSLGNMTYLTKINLGDNNFHGHIPQAFGKLLQLRLLNLSLNQFTGEIPTNISHCTQLVFLQFGGNRFEGQIPHQFFTLTKLEGLGFGINNLTGRIPPWIGNFTSILGMSFGYNNFQGNIPSEIGRLSRLKRLVVVSNNLTGPVWPSICNITSLTYLSLADNQLQGTLPPNIGFTLPNLQALGGGVNNFHGPIPKSLANISGLQILDFPQNKLVGMLPDDMGRLKYLEHLNFASNRLGRGKVGDLNFISYLANCTSLRILSLSSNHFGGVLPSSIGNLSTQMRSLVLGQNMLSGSIPTGIGNLINLQRLAMEVNFLNGSIPPNIGKLKNLEVLYLNYNELSGPVPSSIANLSSLTKLYMSHNKLKESIPAGLGQCESLLTLELSSNNLSGTIPKEILYLSSLSMSLALDHNSFTGPLPHEVGLLVRLSKLDVSENQLSGDIPTNLENCIRMERLNLGGNQFEGTIPESLGALKGIEELNLSSNNLSGKIPQFLGKLGSLKYLNLSYNNFEGQVPKEGVFSNSTMISVIGNNNLCGGLPELHLPPCKYDRTYSRKKFMAPRVLIPIASTVTFLVILVSIIFVCFVLRKSKKDASTNSSSTKEFLPQISYLELSKSTNGFSKENFIGSGSFGSVYKGILSSDGSIVAIKVLNLQHQGASKSFVDECNALSNIRHRNLLKIITSCSSIDVQGNEFKALIFNFMSNGNLDCLLHPTNKQNNQRRLSLIQRLNIAIDIAYGLDYLHNHCEPPIAHCDLKPSNILLDDDMVAHVGDFGLARFMLEGSNDQTSLSQTMSLALKGSIGYIPPEYGTGGRISTEGDVFSYGILLLEMIIGKRPTDEKFGDSVDIHLFTEMALSQGVINIVDPSLLYEETGETNQEGKSEDKTQEIAVMSEEDHKGFVLSWMEECIISILRIGLSCSLRMPRERKPINVVINELQTIKSSYLKFKKRWRIP* | 1042 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 28973483 | 28977809 | - | CsaV3_3G033920.1 | Csa03g03086 | 523991 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g03086 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 838 | 850 | IPR008271 | GO:0004672|GO:0006468 | |
| Csa03g03086 | 1041 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 28 | 1028 | - | - | |
| Csa03g03086 | 1041 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED | 28 | 1028 | - | - | |
| Csa03g03086 | 1041 | Pfam | Leucine rich repeat | 416 | 454 | IPR001611 | GO:0005515 | |
| Csa03g03086 | 1041 | Pfam | Leucine rich repeat | 541 | 599 | IPR001611 | GO:0005515 | |
| Csa03g03086 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 670 | 789 | - | - | |
| Csa03g03086 | 1041 | Gene3D | Ribonuclease Inhibitor | 337 | 637 | IPR032675 | - | |
| Csa03g03086 | 1041 | SMART | LRR_typ_2 | 417 | 440 | IPR003591 | - | |
| Csa03g03086 | 1041 | SMART | LRR_typ_2 | 121 | 145 | IPR003591 | - | |
| Csa03g03086 | 1041 | SMART | LRR_typ_2 | 241 | 265 | IPR003591 | - | |
| Csa03g03086 | 1041 | SMART | LRR_typ_2 | 441 | 465 | IPR003591 | - | |
| Csa03g03086 | 1041 | SMART | LRR_typ_2 | 586 | 611 | IPR003591 | - | |
| Csa03g03086 | 1041 | SMART | LRR_typ_2 | 344 | 368 | IPR003591 | - | |
| Csa03g03086 | 1041 | SMART | LRR_typ_2 | 514 | 538 | IPR003591 | - | |
| Csa03g03086 | 1041 | Pfam | Leucine rich repeat N-terminal domain | 31 | 70 | IPR013210 | - | |
| Csa03g03086 | 1041 | Pfam | Protein kinase domain | 709 | 949 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa03g03086 | 1041 | Pfam | Leucine Rich repeat | 343 | 359 | IPR001611 | GO:0005515 | |
| Csa03g03086 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 714 | 737 | IPR017441 | GO:0005524 | |
| Csa03g03086 | 1041 | SUPERFAMILY | L domain-like | 31 | 327 | - | - | |
| Csa03g03086 | 1041 | SUPERFAMILY | L domain-like | 371 | 625 | - | - | |
| Csa03g03086 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 687 | 932 | IPR011009 | - | |
| Csa03g03086 | 1041 | SMART | serkin_6 | 708 | 1032 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa03g03086 | 1041 | Gene3D | Ribonuclease Inhibitor | 29 | 201 | IPR032675 | - | |
| Csa03g03086 | 1041 | Gene3D | Ribonuclease Inhibitor | 202 | 336 | IPR032675 | - | |
| Csa03g03086 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 790 | 1037 | - | - | |
| Csa03g03086 | 1041 | SMART | LRR_sd22_2 | 217 | 243 | - | - | |
| Csa03g03086 | 1041 | SMART | LRR_sd22_2 | 344 | 370 | - | - | |
| Csa03g03086 | 1041 | SMART | LRR_sd22_2 | 514 | 537 | - | - | |
| Csa03g03086 | 1041 | SMART | LRR_sd22_2 | 290 | 322 | - | - | |
| Csa03g03086 | 1041 | SMART | LRR_sd22_2 | 417 | 443 | - | - | |
| Csa03g03086 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 708 | 1041 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g02308 | Csa-Chr1:20200636 | Csa03g03086 | Csa-Chr3:28973483 | 3.86E-08 | dispersed | |
| Csa03g02964 | Csa-Chr3:28208482 | Csa03g03086 | Csa-Chr3:28973483 | 8.02E-174 | dispersed | |
| Csa03g03086 | Csa-Chr3:28973483 | Csa03g03088 | Csa-Chr3:28981023 | 0 | dispersed | |
| Csa03g03161 | Csa-Chr3:29321993 | Csa03g03086 | Csa-Chr3:28973483 | 4.80E-14 | dispersed | |
| Csa06g03715 | Csa-Chr6:29694918 | Csa03g03086 | Csa-Chr3:28973483 | 1.58E-08 | dispersed | |
| Csa03g03085 | Csa-Chr3:28968635 | Csa03g03086 | Csa-Chr3:28973483 | 0 | tandem | |
| Csa03g03086 | Csa-Chr3:28973483 | Csa03g03087 | Csa-Chr3:28980155 | 2.02E-119 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 78036 | PF00069 | Pkinase | 4.20E-40 | CL0016 | Csa | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g03086 | - | - | csv:101218760 | 2039.62 |