Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03087 ATGCACAACAAAGATATTATAGCTAGATTATTCATGTGGGACCAATTAATCCAACTTTGTTTAGTCAAACCACATCCCCTGCACTCTAGGGCTCTACGAGATATATCCCTCCATGGGTCTATGGTTGCCGTTAAGGTTCTAAATCTCCAACAACAAGGTGCTTCGAAGAGTACTGTTGATGAATGTAATGCTCTCTCAAACATACGACACCGAAATCTCCTCAAAATCATAACTTCCTGCTCAAGTATTGATGGACAAGGTGATGAATTTAAAGCTCTAGTCTTTAATTTCATGTCCAATGGAAATCTTGATAGCTGGCTTCATTCAACAAATCAAGGAACCAATCAAAGAAGATTGAGTCTCATCCAAAGATTGAACATTGCTATTGACATTGCATGTGGATTAGACTATCTCCATAATCATTGTGAAACTCCAATCATTCATTGTGATATAAAGCCAAGCAATGTATTGCTTGATGATGATATGGTAGCTCATGTTGGAGACTTTGGGTTAGCTAGACTCATGTTGGAAGAATCAAATGATCAAATATCTTTCAGTCAAACCATGTCACTTGCACTCAAGGGTTCTGTAGGATACATCCCTCCAGAGTATGGAAGCGGTAGCAGAATTTCTATCGAAGGGGATGTCTTCAGCTACGGGATATTGTTGTTAGAGATGATCATCGGAAAAAGGCCAATTGACGACACATTTGATGATGGTGTGGATATTCACTTTTTACTGCAGAAGCGCTAG 753 39.18 MHNKDIIARLFMWDQLIQLCLVKPHPLHSRALRDISLHGSMVAVKVLNLQQQGASKSTVDECNALSNIRHRNLLKIITSCSSIDGQGDEFKALVFNFMSNGNLDSWLHSTNQGTNQRRLSLIQRLNIAIDIACGLDYLHNHCETPIIHCDIKPSNVLLDDDMVAHVGDFGLARLMLEESNDQISFSQTMSLALKGSVGYIPPEYGSGSRISIEGDVFSYGILLLEMIIGKRPIDDTFDDGVDIHFLLQKR* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28980155 28980993 - CsaV3_3G033930.1 Csa03g03087 523992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03087 250 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 38 246 - -
Csa03g03087 250 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 38 246 - -
Csa03g03087 250 Gene3D Transferase(Phosphotransferase) domain 1 99 249 - -
Csa03g03087 250 Pfam Protein kinase domain 39 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03087 250 SUPERFAMILY Protein kinase-like (PK-like) 38 239 IPR011009 -
Csa03g03087 250 SMART serkin_6 13 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03087 250 PIRSF ILK 30 250 - -
Csa03g03087 250 ProSiteProfiles Protein kinase domain profile. 1 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03087 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Csa03g03087 250 Gene3D Phosphorylase Kinase; domain 1 34 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03087 Csa-Chr3:28980155 Csa03g03085 Csa-Chr3:28968635 4.28E-120 dispersed
Csa03g03086 Csa-Chr3:28973483 Csa03g03087 Csa-Chr3:28980155 2.02E-119 tandem
Csa03g03087 Csa-Chr3:28980155 Csa03g03088 Csa-Chr3:28981023 6.54E-124 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78037 PF00069 Pkinase 1.70E-33 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03087 - - csv:101218760 494.197