Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03088 ATGAGACATAATATCTGCAGTACCAAAATGATATTTCTCTCTGATGTCTTTTTGTTGACCATCAGCTTGGTTTTTGCAAATACTTTAGCAGATGAATCAGATCGCACTGCTCTACTTGACTTGAAAGGAAGAGTACTGAACGACCCACTTAAAGTCATGAGTTCTTGGAACGATTCCACGTATTTTTGTGACTGGATCGGTGTTACTTGCAATGACACCATTGGAAGGGTGGTGAGTTTAAATTTGGAAACTCGAGATCTTACTGGTTCTGTACCTCCTTCCTTAGGAAATCTCACTTACCTAACTGAAATCCATTTGGGAGGGAACAAATTCCATGGCCCAATTCCCCAAGAGTTCGGTCGGTTACTTCAATTGCGTCTTCTCAATCTATCCTACAATAACTTTGGTGGTGAGTTTCCAGCGAATATAAGTCATTGCACTAAGTTGGTTGTCTTGGAGCTTAGCAGCAATGGGTTTGTGGGTCAGATTCCGAACGAATTGTCCACATTGACTAAGTTGGAACGATTTAAGTTCGGCATCAATAATTTTACTGGAACAATTCCACCTTGGGTAGGAAATTTTTCTTCCATATTGGCTATGTCATTCGGGCGGAACAACTTTCATGGAAGCATTCCAAGTGAAATAGGGCGTCTATCTAAAATGGAATTCTTCACAGTTGTTGAGAATAATTTGACAGGTATAGTGCCACCTTCGATCTATAATATATCTTCTTTGACACTCTTGCAGTTTACTAAAAATCATTTGCAAGGTACTCTACCACCAAATATCGGGTTTACTCTTCCCAATCTTCAATCGTTTGCTGGTGGTATTAATAATTTCGACGGACCTATTCCGAAGTCCTTAGCTAATATCTCAAGCCTTCAAATCTTAGATTTTCCTAATAACAATTTTTTTGGGATGGTACCAGATGACATAGGGAGATTGAAATACCTAGAGCGTTTAAATTTTGGATCAAATAGTCTTGGAAGTGGAAAAGTTGGTGACTTAAATTTTATTAGTTCCTTGGTCAACTGTACTAGGCTAAGGATTTTGGGTCTAGATACAAACCACTTTGGAGGAGTAGTGCCTTCTTCCATTGCCAACCTTTCAAACCAGCTAGTTGCCATAACCTTGGGTGATAATATGTTAAGTGGGAGCATTCCTTTAGGGATTACAAACTTGATTAACTTGCAAGTTCTTGCAATGGAAGGAAACATGATGAATGGTAGTAGTATCCCTCCCAATATAGGGAACCTTAAAAGTTTGGTGCTTTTATACTTGGGTAGAAATGGATTAATTGGGCCAATCCCTTCCTCCATTGGTAACTTAACTTCACTTACGAATCTCTACTTGAGTTATAACAAACATGACGGATATATACCAACAAGCTTAGGAGAATGCAAAAGCCTTGTATCTCTTGAGCTATCTAGTAATAACCTAAGTGGCACCATACCAAAGGAAATCTTTAGTCTCACTTCTCTCTCAATCACTTTGACCTTAGATCATAACTCATTTACTGGTTCATTGCCAGATGGAGTGGGTGGTTTACTTAGTTTATTACAACTAGATTTATCAGAAAACAAGTTATCAGGTAATATTCCTAGCAACCTCGGTAAATGTACTAGTATGGAACAATTGTATCTTGGGGGAAACCAATTTGAGGGAACAATTCCTCAATCTTTCAAAACTTTGAAAAGCCTTGTAAAATTAAATTTATCACACAACAACTTGATAGGACCAATTCCTGAATTTTTATGTGAACTTCCTTCACTCATGTATGTCGATCTATCCTACAATAACTTTGTGGGAAAAGTCCCTGAAGAAGGAGCTTTTTCCAATTCAACCATGTTTTCTATCATTGGGAATAATAATCTGTGTGATGGTTTGCAAGAATTACATTTGCCTACATGCATGCCTAACGACCAAACACGTTCATCATCAAAGGTGTTAATCCCTATAGCATCTGCAGTCACATCTGTTGTTATTTTGGTGAGCATCTTCTGTTTGTGTTTTCTGCTTAAGAAGTCGAGAAAGGATATTTCAACGTCATCTTTTGCAAACGAGTTTCTGCCACAAATTTCATACTTGGAACTTAGCAAATCAACCGATGGATTCTCTATGGATAATTTGATTGGTTCGGGTAGTTTCGGTACTGTGTATAAAGGTTTACTTTCAAATGGTGGATCTATTGTTGCCATAAAAGTTTTAAATCTCCAACAAGAAGGTGCTTCCAAGAGTTTTGTTGATGAATGCAATGCCCTTTCGAACATACGACATCGAAATCTCCTCAAGATCATAACTTCTTGCTCAAGTATTGACGTACATGGCAATGAATTTAAAGCTCTAGTTTTCAATTTTATGTCCAATGGAAATCTTGATGGTTGGCTTCATCCTCCAAATCAGGGGCAAAATCAAAGGCGGTTGAGTCTCATCCAGAGATTGAACATTGCTATTGATATTGCATGTGGATTAGACTATCTCCATAATCATTGTGAAACTCCTATTGTTCATTGTGATTTGAAGCCAAGCAACATACTGCTCGATGACAACATGGTAGCTCATGTAGGGGATTTTGGATTAGCTAGATTCATGCTAGAAAGATCGAGTGATCAAATATTTTTTAGTCAAACCATGTCACTTGTACTCAAGGGTTCTATTGGATATATCCCTCCAGAGTATGGTACAGGTAGCATAATTTCCATTGAAGGAGATATCTTCAGTTACGGAATACTATTACTAGAGATGATCATCGGAAAAAGACCCACTGATGACACCTTTGGCAATGATATGGACATTCACTTGTTCACTAGAAGGGCATTACCTCGAGATGCTTTAAGCATAATTGACCCTTCAATACTATTCGAAGAAACATGCCAAGAAGAAAATAATGATGACAAGGTAAAGAGTGGAGAAGATCATAAAGAAATTGTTCCAAGATGGAAGGTAGAGTGTCTAGTCTCGATAATGAGAATTGGTTTGACATGCTCTTTAAGAGCACCTAGTGAGAGAACCTCAATGAGTGTTGTCGTTAATGAATTGCAAGCAATTAAAAGCTCATATCTAAAAGGCACACTAAAGGTTCTGTAA 3087 37.84 MRHNICSTKMIFLSDVFLLTISLVFANTLADESDRTALLDLKGRVLNDPLKVMSSWNDSTYFCDWIGVTCNDTIGRVVSLNLETRDLTGSVPPSLGNLTYLTEIHLGGNKFHGPIPQEFGRLLQLRLLNLSYNNFGGEFPANISHCTKLVVLELSSNGFVGQIPNELSTLTKLERFKFGINNFTGTIPPWVGNFSSILAMSFGRNNFHGSIPSEIGRLSKMEFFTVVENNLTGIVPPSIYNISSLTLLQFTKNHLQGTLPPNIGFTLPNLQSFAGGINNFDGPIPKSLANISSLQILDFPNNNFFGMVPDDIGRLKYLERLNFGSNSLGSGKVGDLNFISSLVNCTRLRILGLDTNHFGGVVPSSIANLSNQLVAITLGDNMLSGSIPLGITNLINLQVLAMEGNMMNGSSIPPNIGNLKSLVLLYLGRNGLIGPIPSSIGNLTSLTNLYLSYNKHDGYIPTSLGECKSLVSLELSSNNLSGTIPKEIFSLTSLSITLTLDHNSFTGSLPDGVGGLLSLLQLDLSENKLSGNIPSNLGKCTSMEQLYLGGNQFEGTIPQSFKTLKSLVKLNLSHNNLIGPIPEFLCELPSLMYVDLSYNNFVGKVPEEGAFSNSTMFSIIGNNNLCDGLQELHLPTCMPNDQTRSSSKVLIPIASAVTSVVILVSIFCLCFLLKKSRKDISTSSFANEFLPQISYLELSKSTDGFSMDNLIGSGSFGTVYKGLLSNGGSIVAIKVLNLQQEGASKSFVDECNALSNIRHRNLLKIITSCSSIDVHGNEFKALVFNFMSNGNLDGWLHPPNQGQNQRRLSLIQRLNIAIDIACGLDYLHNHCETPIVHCDLKPSNILLDDNMVAHVGDFGLARFMLERSSDQIFFSQTMSLVLKGSIGYIPPEYGTGSIISIEGDIFSYGILLLEMIIGKRPTDDTFGNDMDIHLFTRRALPRDALSIIDPSILFEETCQEENNDDKVKSGEDHKEIVPRWKVECLVSIMRIGLTCSLRAPSERTSMSVVVNELQAIKSSYLKGTLKVL* 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28981023 28984384 - CsaV3_3G033940.1 Csa03g03088 523993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03088 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Csa03g03088 1028 SUPERFAMILY L domain-like 372 627 - -
Csa03g03088 1028 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Csa03g03088 1028 Gene3D Ribonuclease Inhibitor 335 640 IPR032675 -
Csa03g03088 1028 Gene3D Transferase(Phosphotransferase) domain 1 787 1024 - -
Csa03g03088 1028 Gene3D Ribonuclease Inhibitor 198 334 IPR032675 -
Csa03g03088 1028 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 29 1017 - -
Csa03g03088 1028 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Csa03g03088 1028 SMART serkin_6 705 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03088 1028 PRINTS Leucine-rich repeat signature 564 577 - -
Csa03g03088 1028 PRINTS Leucine-rich repeat signature 519 532 - -
Csa03g03088 1028 Pfam Protein kinase domain 707 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03088 1028 SUPERFAMILY L domain-like 31 328 - -
Csa03g03088 1028 Gene3D Phosphorylase Kinase; domain 1 670 786 - -
Csa03g03088 1028 ProSitePatterns Protein kinases ATP-binding region signature. 711 734 IPR017441 GO:0005524
Csa03g03088 1028 SMART LRR_typ_2 516 540 IPR003591 -
Csa03g03088 1028 SMART LRR_typ_2 394 419 IPR003591 -
Csa03g03088 1028 SMART LRR_typ_2 564 588 IPR003591 -
Csa03g03088 1028 SMART LRR_typ_2 467 491 IPR003591 -
Csa03g03088 1028 SMART LRR_typ_2 122 146 IPR003591 -
Csa03g03088 1028 ProSiteProfiles Protein kinase domain profile. 705 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03088 1028 Pfam Leucine rich repeat 544 601 IPR001611 GO:0005515
Csa03g03088 1028 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 29 1017 - -
Csa03g03088 1028 SUPERFAMILY Protein kinase-like (PK-like) 678 1013 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01914 Csa-Chr2:18043941 Csa03g03088 Csa-Chr3:28981023 0 dispersed
Csa03g03085 Csa-Chr3:28968635 Csa03g03088 Csa-Chr3:28981023 0 dispersed
Csa03g03086 Csa-Chr3:28973483 Csa03g03088 Csa-Chr3:28981023 0 dispersed
Csa03g03088 Csa-Chr3:28981023 Csa03g03092 Csa-Chr3:28993173 0 dispersed
Csa03g03091 Csa-Chr3:28990623 Csa03g03088 Csa-Chr3:28981023 2.27E-19 dispersed
Csa03g03087 Csa-Chr3:28980155 Csa03g03088 Csa-Chr3:28981023 6.54E-124 tandem
Csa03g03088 Csa-Chr3:28981023 Csa03g03089 Csa-Chr3:28985831 2.76E-77 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78038 PF00069 Pkinase 3.10E-39 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03088 - - cmo:103486310 1783.84