Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03090 ATGGGGCACACTTTCTGCAATACCAAGAAGATAATGCTCTATAATATTTTTTTGTTATCTCTCACCTTAGATTTTGCAAGTATGCTCACTTTTGAAAATGAATCAGATCGCTTAGCTCTGCTTGACTTGAAAGCCAGAGTACACATCGACCCACTCAAAATCATGAGTTCTTGGAACGACTCCACACATTTTTGTGACTGGATTGGTGTTGCTTGCAATTACACCAATGGAAGAGTTGTGGGTTTAAGCTTGGAAGCTCGAAAGCTAACTGGGTCAATACCTCCTTCTTTGGGGAATCTTACTTATCTCACTGTAATCAGATTGGACGACAACAACTTCCATGGAATAATTCCCCAAGAATTTGGTCGACTACTACAATTACGCCATCTCAATTTGTCCCAGAATAACTTCAGCGGCGAGATTCCGGCAAATATAAGTCATTGCACAAAACTTGTTAGTCTGGTTTTAGGTGGCAATGGCCTTGTTGGTCAGATTCCACAGCAGTTTTTCACGTTAACCAATTTGAAACTTATTGGTTTTGCGGCTAACAGTCTAACTGGAAGTTTCCCATCCTGGATAGGAAATTTTTCTTCGTTATTGAGTATGTCATTGATGCGGAACAATTTTCAAGGCAGCATTCCTAGTGAAATAGGGCGCCTATCTGAATTGAGATTCTTCCAAGTCGCTGGCAATAATTTAACAGGTGCGTCGTGGCCTTCAATTTGTAATATATCGTCTCTGACTTACTTGTCTCTTGGTTACAATCAATTCAAAGGAACTCTACCACCAGATATCGGACTTTCTCTGCCCAATCTTCAGGTCTTTGGGTGTTCAGGTAATAATTTTCATGGGCCAATTCCAAATTCCCTAGCTAATATCGTTAGCCTTCAAATCATAGATTTTTTTGATAACAATCTTGTTGGAACGCTACCTGATGACATGGGGAACTTGAGAAACTTGGAGCGTCTAAATCTTGGAGAAAATAGTCTTGGAAGTGGGGAAGCTGGTGACTTAAATTTTATTAATTCCTTGGTTAATTGTACTCGGCTAAGGGCTTTGGGTCTAGATACGAACCATTTTGGAGGAGTATTGCCTTCATCCATTGCCAACCTTTCAAACCAGCTAACAGCGCTATCCTTGGGTTATAATATGTTAAGCGGAAGCATTCCTTCAGGGACTACAAACTTGATTAACTTGCAAGGTTTTGGAGTGGAAGGAAACATTATGAATGGTAGTATCCCTCCCAATATAGGGAATCTTAAAAACTTGGTGCTTTTGTATTTGTATGAAAATGAATTTACTGGACCAATCCCTTACTCCATTGGTAACTTATCTTCCCTCACCAAGCTCCACATGAGCCATAACCAACTTGACGGAAGTATACCAACAAGCTTGGGACAATGTAAAAGCCTCACAAGTCTTAAGCTATCTAGTAACAACCTAAACGGTACCATACCAAAGGAAATCTTTGCTCTTCCTTCTCTTTCAATCACTTTGGCCTTAGATCATAACTCGTTTACTGGTTCACTGCCAAATGAAGTGGATGGCCTACTTGGTCTATTAGAACTAGATGTGTCGGAGAACAAACTATTTGGTGATATTCCTAACAATCTCGATAAATGTACTAACATGGAACGATTGTATCTTGGGGGTAACAAGTTTGGAGGAACAATTCCTCAATCTTTAGAAGCTCTAAAAAGCTTAAAAAAACTAAATTTATCAAGCAACAACTTATCAGGGCCAATTCCCCAATTTCTTAGCAAACTTCTTTTCCTCGTGTCTGTCGATTTATCGTACAATAACTTTGAGGGAAAAGTGCCTATAGAAGGAGTTTTTTCCAATTCTACCATGTTTTCTATCATTGGAAATAATAATCTATGTGGTGGTTTACATGAATTACATTTACCTTTGTGCACATCTAACCAAACACGTTTGTCTAATAAGCAGTTTCTAAAATCAAGAGTGTTAATCCCCATGGCAATTGTAATCACCTTTGTTGGTATTTTGGTGGTCTTCATTTTGGTGTGTTTTGTGCTGAGGAAGTCAAGGAAGGATGCTTCAACTACTAATTCACTTTCTGCAAAAGAGTTTATACCACAGATTTCTTACTTGGAACTTAGTAAATCAACGAGTGGATTCTCAACGGAAAATTTGATTGGTTCTGGTAGTTTTGGCTCTGTGTATAAAGGTGTTCTTTCAAATGATGGGTCTGTGGTTGCTGTTAAGGTATTAAATCTCCAACAACAAGGTGCTTCGAAGAGTTTTGTTGATGAATGTAATGCTCTCTCAAACATACGACATCGAAATCTCCTCAAGATCATAACTTCTTGCTCAAGTATTGATGGACAAGGCAACGAATTTAAAGCTCTAGTTTTTAATTTCATGTCCAATGGAAATCTTGATTGTTGGCTTCATCCAAAAAATCAAGGGACCAATCTAAGACGGTTGAGTCTCATCCAGAGATTGAACATTGCAATTGATATTGCATGTGGACTAGACTATCTCCACACTCATTGTGAGACTCCAATCATTCATTGTGATATAAAGCCAAGCAATATATTGCTTGACGAGATATGGTAG 2580 38.57 MGHTFCNTKKIMLYNIFLLSLTLDFASMLTFENESDRLALLDLKARVHIDPLKIMSSWNDSTHFCDWIGVACNYTNGRVVGLSLEARKLTGSIPPSLGNLTYLTVIRLDDNNFHGIIPQEFGRLLQLRHLNLSQNNFSGEIPANISHCTKLVSLVLGGNGLVGQIPQQFFTLTNLKLIGFAANSLTGSFPSWIGNFSSLLSMSLMRNNFQGSIPSEIGRLSELRFFQVAGNNLTGASWPSICNISSLTYLSLGYNQFKGTLPPDIGLSLPNLQVFGCSGNNFHGPIPNSLANIVSLQIIDFFDNNLVGTLPDDMGNLRNLERLNLGENSLGSGEAGDLNFINSLVNCTRLRALGLDTNHFGGVLPSSIANLSNQLTALSLGYNMLSGSIPSGTTNLINLQGFGVEGNIMNGSIPPNIGNLKNLVLLYLYENEFTGPIPYSIGNLSSLTKLHMSHNQLDGSIPTSLGQCKSLTSLKLSSNNLNGTIPKEIFALPSLSITLALDHNSFTGSLPNEVDGLLGLLELDVSENKLFGDIPNNLDKCTNMERLYLGGNKFGGTIPQSLEALKSLKKLNLSSNNLSGPIPQFLSKLLFLVSVDLSYNNFEGKVPIEGVFSNSTMFSIIGNNNLCGGLHELHLPLCTSNQTRLSNKQFLKSRVLIPMAIVITFVGILVVFILVCFVLRKSRKDASTTNSLSAKEFIPQISYLELSKSTSGFSTENLIGSGSFGSVYKGVLSNDGSVVAVKVLNLQQQGASKSFVDECNALSNIRHRNLLKIITSCSSIDGQGNEFKALVFNFMSNGNLDCWLHPKNQGTNLRRLSLIQRLNIAIDIACGLDYLHTHCETPIIHCDIKPSNILLDEIW* 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28986522 28989101 - CsaV3_3G033960.1 Csa03g03090 523995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03090 859 SMART serkin_6 713 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03090 859 ProSiteProfiles Protein kinase domain profile. 713 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03090 859 SUPERFAMILY L domain-like 374 628 - -
Csa03g03090 859 Gene3D Transferase(Phosphotransferase) domain 1 795 859 - -
Csa03g03090 859 SUPERFAMILY L domain-like 57 329 - -
Csa03g03090 859 Pfam Leucine Rich Repeat 567 589 IPR001611 GO:0005515
Csa03g03090 859 Gene3D Ribonuclease Inhibitor 32 182 IPR032675 -
Csa03g03090 859 Gene3D Ribonuclease Inhibitor 183 262 IPR032675 -
Csa03g03090 859 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Csa03g03090 859 SMART LRR_typ_2 244 268 IPR003591 -
Csa03g03090 859 SMART LRR_typ_2 124 148 IPR003591 -
Csa03g03090 859 SMART LRR_typ_2 444 468 IPR003591 -
Csa03g03090 859 SMART LRR_typ_2 565 593 IPR003591 -
Csa03g03090 859 SMART LRR_typ_2 469 492 IPR003591 -
Csa03g03090 859 SMART LRR_typ_2 317 340 IPR003591 -
Csa03g03090 859 SMART LRR_typ_2 517 541 IPR003591 -
Csa03g03090 859 Gene3D Phosphorylase Kinase; domain 1 675 794 - -
Csa03g03090 859 Pfam Protein kinase domain 714 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03090 859 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Csa03g03090 859 Gene3D Ribonuclease Inhibitor 336 640 IPR032675 -
Csa03g03090 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 30 857 - -
Csa03g03090 859 SUPERFAMILY Protein kinase-like (PK-like) 690 857 IPR011009 -
Csa03g03090 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Csa03g03090 859 Gene3D Ribonuclease Inhibitor 263 335 IPR032675 -
Csa03g03090 859 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
Csa03g03090 859 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 30 857 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03090 Csa-Chr3:28986522 Csa03g03092 Csa-Chr3:28993173 0 dispersed
Csa03g03090 Csa-Chr3:28986522 Csa03g03091 Csa-Chr3:28990623 9.43E-11 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78040 PF00069 Pkinase 2.50E-24 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03090 - - csv:101219231 1631.31