Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03108 ATGGCAGAAGATGATATATATACAAAAGATGGTACTGTTGATGTTCATAAGAAGCCTGCTATTAAGAAAAAAACTGGAAATTGGAAGGCCTGCCGTTTCATTCTTGGGAATGAATGCTGTGAAAGATTGGCATATTATGGGATGAGTACCAATCTAGTGAACTATCTTCAAATACGTCTCAATATGGACAATGTAACTGCTTCAAATAGTGTCACTAGTTGGTCAGGAACTTGCTACCTTACACCATTGATTGGAGCTTTCTTGGCTGATGCTTACTTGGGAAGATTTTGGACAATTGCCAGTTTCTCAATAATCTATGCCTTTGGCATGACGTTGTTGACAATGGCTGCTTCAATCCCGGGATTAAAGCCATCGTGTGATAGTAGTGGTTGCCATCCAAGTGGAGGGCAAACCGCTGCCACTTTCGTAGCGCTTTACTTGATTGCACTCGGAACCGGGGGAATCAAGCCCTGTGTTTCGTCTTTTGGGGCTGACCAATTCGATGAAAATGATGAGGTTGAAAGGAAGAAGAAAAGTTCCTTCTTCAATTGGTTTTACTTTTCAATCAACGTGGGTGCAATGATTGCCTCCTCAGTTTTGGTGTGGATACAAATGAATGTAGGCTGGGGGTGGGGGTTTGGAGTTCCTGCAGTAGCTATGGCTATTGCTGTAGTGTTTTTCTTTTCCGGTAGCTCGTTGTACCGTCTTCAAAAGCCTGCAGGAAGTCCTCTCACGAGAATTTTGCAAGTTATAGTTGCAGCCTGTCGGAAACACCAGGTACACGTTCCAGAAGATAAGTCTCTTCTTCATGAGACCGCAGATGACATTGAGTCGAAAATCGAAGGAAGTCGCAAGCTTGAGCACACCAACAATTTTAAGTTCCTAGACAAGGCTTCTGTAGAGACCGAAAACGATCGGATCAAGGGCTTACCAAATGAATGGAGACTCTGTACGGTAACTCAAGTTGAGGAGCTGAAGAGCATTGTCCGGTTGTTGCCTGTGTGGGCCTCTGGAATAGTATTTGCAGCAGTCTATAGCCAAATGAGCACCATGTTCGTTCTACAGGGCAATACATTGGACCAGCACATTGGCCCAAGTTTCAAAATCCCATCAGCCTCCCTTTCCATCTTCGATACTATCAGCGTGCTCTTCTGGGCTCCTGTATACGATAGACTCATAGTCCCAATTGCAAGGAAGTTCACCAACAATGAGCGTGGATTCACTCAGCTACAACGAATGGGAATAGGACTTGCCATCTCTGTTTTCTCCATGGTTACAGCAGGCGCTTTGGAAGTTGCCAGGCTCAACTATGTTAGAGTGAACAACCTATACGATGTTGAGACCATTCCGATGTCGATATTCTGGCAAGTTCCACAGTACTTTTTCATCGGTTGTGCAGAAGTTTTCACATTTATCGGACAGTTAGAGTTTTTCTATGACCAAGCACCGGACGCAATGAGAAGCATGATGGCTGCTCTGTCTCTCACAACTGTAGGATTGGGAAACTACTTAAGCACATTGCTTGTTACAATCGTGACGAAAGTGACGACGAGACATGGGAAGCTCGGATGGATTCCTAGTAACTTAAACATGGGACATCTTGACTATTTCTTCTGGCTGTTGGCCATTCTCAGCGTGGTTAATTTCTTTGTCTATCTATTAGTGGCTAAATGCTATACTTACAAAAGGGTAACAGGTCATTTGCATTAG 1710 43.98 MAEDDIYTKDGTVDVHKKPAIKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQIRLNMDNVTASNSVTSWSGTCYLTPLIGAFLADAYLGRFWTIASFSIIYAFGMTLLTMAASIPGLKPSCDSSGCHPSGGQTAATFVALYLIALGTGGIKPCVSSFGADQFDENDEVERKKKSSFFNWFYFSINVGAMIASSVLVWIQMNVGWGWGFGVPAVAMAIAVVFFFSGSSLYRLQKPAGSPLTRILQVIVAACRKHQVHVPEDKSLLHETADDIESKIEGSRKLEHTNNFKFLDKASVETENDRIKGLPNEWRLCTVTQVEELKSIVRLLPVWASGIVFAAVYSQMSTMFVLQGNTLDQHIGPSFKIPSASLSIFDTISVLFWAPVYDRLIVPIARKFTNNERGFTQLQRMGIGLAISVFSMVTAGALEVARLNYVRVNNLYDVETIPMSIFWQVPQYFFIGCAEVFTFIGQLEFFYDQAPDAMRSMMAALSLTTVGLGNYLSTLLVTIVTKVTTRHGKLGWIPSNLNMGHLDYFFWLLAILSVVNFFVYLLVAKCYTYKRVTGHLH* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29090085 29093457 + CsaV3_3G034140.1 Csa03g03108 524013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03108 569 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 12 565 IPR000109 GO:0016020|GO:0022857|GO:0055085
Csa03g03108 569 SUPERFAMILY MFS general substrate transporter 20 557 IPR036259 -
Csa03g03108 569 PANTHER PROTEIN NRT1/ PTR FAMILY 8.1 12 565 - -
Csa03g03108 569 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 85 109 IPR018456 GO:0006857|GO:0016020|GO:0022857
Csa03g03108 569 Pfam POT family 96 525 IPR000109 GO:0016020|GO:0022857|GO:0055085
Csa03g03108 569 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 2. 182 194 IPR018456 GO:0006857|GO:0016020|GO:0022857
Csa03g03108 569 Gene3D MFS general substrate transporter like domains 2 566 IPR036259 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03108 Csa06g02722 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00796 Csa-Chr1:5037201 Csa03g03108 Csa-Chr3:29090085 1.02E-114 dispersed
Csa03g00297 Csa-Chr3:2456721 Csa03g03108 Csa-Chr3:29090085 2.98E-175 dispersed
Csa03g03108 Csa-Chr3:29090085 Csa06g01443 Csa-Chr6:12291966 0 dispersed
Csa04g00215 Csa-Chr4:1277647 Csa03g03108 Csa-Chr3:29090085 2.35E-143 dispersed
Csa05g01310 Csa-Chr5:13912491 Csa03g03108 Csa-Chr3:29090085 1.50E-33 dispersed
Csa05g01311 Csa-Chr5:13924288 Csa03g03108 Csa-Chr3:29090085 7.79E-45 dispersed
Csa06g00628 Csa-Chr6:5259658 Csa03g03108 Csa-Chr3:29090085 1.37E-135 dispersed
Csa06g02230 Csa-Chr6:20085995 Csa03g03108 Csa-Chr3:29090085 1.34E-124 dispersed
Csa03g03108 Csa-Chr3:29090085 Csa03g02614 Csa-Chr3:24699428 1.08E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03108 K14638 - csv:101220183 1135.17