Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g03129 | ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTCAGCGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGACGAGGGTTCGTGTTATTCTCAGTTTTTCTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCTGTGGAGGTTGAAAATGAAAATGGGATCACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATACCAATCGAATTGGGTTGTTCGTGCAAAGATGATTTAGCCGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGTCATTCCATTGCTCGAAATATTCTCGGACCAAATGAGGTTGAGCTAACAGAGCAGTCTAATGAATCCAACAATGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGTTTCTGGTGTGGGCACCGGTTTCTGAATTTTCTGCTCGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCACTTCAATGTGCCCTCGTAA | 696 | 45.11 | MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRFAFVSQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASSTTTVAASIPSSDSQSFWCGHRFLNFLLACMVFAFVISWLFHFNVPS* | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 29161209 | 29164831 | + | CsaV3_3G034350.1 | Csa03g03129 | 524034 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g03129 | 231 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Csa03g03129 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 | |
| Csa03g03129 | 231 | PANTHER | OS01G0850200 PROTEIN | 8 | 231 | - | - | |
| Csa03g03129 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Csa03g03129 | 231 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Csa03g03129 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
| Csa03g03129 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 | |
| Csa03g03129 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 231 | - | - | |
| Csa03g03129 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g01326 | Csa-Chr1:8551630 | Csa03g03129 | Csa-Chr3:29161209 | 2.52E-28 | dispersed | |
| Csa03g03129 | Csa-Chr3:29161209 | Csa06g03713 | Csa-Chr6:29687742 | 3.99E-30 | dispersed | |
| Csa01g02480 | Csa-Chr1:21906292 | Csa03g03129 | Csa-Chr3:29161209 | 9.47E-49 | wgd | |
| Csa03g03129 | Csa-Chr3:29161209 | Csa06g00156 | Csa-Chr6:1019769 | 1.68E-71 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g03129 | - | - | csv:101218915 | 436.032 |