Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03143 ATGGCTGAGGGTATTGAATCCTACGACCATGTACCTCAACAGAGCCGCCGTGACAAGCTCCGTGAACATCCCGACCACCACCACCGTTCTAATTTCCTACCTTTCTACGACCCTTCTTCTTCTGACTCTTCCAATCGCTTCCAATTTCACCACCATCCTTTTTTCGACCCCCAAATTCAATCCCCTATTTTTCCTGAAATCCACTCCTTCCCCACCGAACCTCTTTCCCTTTCCCTCTCCTCTCACCCTAATTTTCTTGCTTCTCCTATTACCCCTCCTCTTCCTCTTGGCCCTTTCACCGGTTACGCTTCCATTTTAAAAGGCTCCAGGTTCCTCAAGCCTGCTCATCACTTGCTTCAAGACCTCTGTGATTCTGTTCATTATTCCTCCTCCTCTTCTTCTTTCATCCATGATCCTTCCTCTGATTCCTTCCCCCATTCCCCAATTCTTGACCATCACTACCCTCTTCCTTCTTCTTCCGATTCTTCTACTCCTCCTCATAAATCAACGCTTCTCTCAATGCTTGATGAGGTTTACAGAAAATATAAGCAGTACTATCAACAAATCCAAGAAGTAATGACATCATTTGAGTACATCTCGGGGCTTGGGAATGCAGCACCATATGCTAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGACCAACTTCAATTCAATAAAAAAACTCATGGTGACTACAATCAAAGATCCGTTCAGAACCCTGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTGCCTGAACGAGCAGTAACCGTTCTTCGTGCTTGGTTGTTCGAACATTTCTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTAGAAACCAAGCAGCAACAAACACAGAAGAATTTACATAAAGAAGATCGAACCACCACCAGAGTAAACGATCATCATCCATCGAACCCGCTCACAATGGAAAACCCTTCTACATCCACTCAACAAATTCAAGATACTCCTCCCAAGCGCACTCGAAATGAACCTCCCGACATGCCAATGGGAAACCATGACGAGCCCTTGAATGTATCCTACAACTTATCAAGCCATCCCCATGTTGGAGCGAACGTAAACATGGCGGGTAACAACGGTGGAGTTTCCTTGACTCTTGGTCTTCACCAGAATAACGGTATAGGTGGCTTTTCTGAACCCTTCCCTGTAGGGTTCCCTGTCGCAGCCACTCGACGTTTTGGCCTAGGAATACAAGGAAACAGCGATGGGTATGTGATGGGTGGACATTTCAGTCGAGATGTTCTTGGAGGGCAGCTGTTACATGACTTTGTGGGCTGA 1443 45.6 MAEGIESYDHVPQQSRRDKLREHPDHHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIQSPIFPEIHSFPTEPLSLSLSSHPNFLASPITPPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHYSSSSSSFIHDPSSDSFPHSPILDHHYPLPSSSDSSTPPHKSTLLSMLDEVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQQTQKNLHKEDRTTTRVNDHHPSNPLTMENPSTSTQQIQDTPPKRTRNEPPDMPMGNHDEPLNVSYNLSSHPHVGANVNMAGNNGGVSLTLGLHQNNGIGGFSEPFPVGFPVAATRRFGLGIQGNSDGYVMGGHFSRDVLGGQLLHDFVG* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29231761 29235578 + CsaV3_3G034490.1 Csa03g03143 524048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03143 480 SMART HOX_1 258 322 IPR001356 GO:0003677
Csa03g03143 480 SUPERFAMILY Homeodomain-like 260 325 IPR009057 -
Csa03g03143 480 MobiDBLite consensus disorder prediction 10 32 - -
Csa03g03143 480 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677|GO:0006355
Csa03g03143 480 SMART prehox3 100 229 IPR006563 -
Csa03g03143 480 MobiDBLite consensus disorder prediction 349 374 - -
Csa03g03143 480 CDD homeodomain 258 319 IPR001356 GO:0003677
Csa03g03143 480 Pfam Associated with HOX 105 227 IPR006563 -
Csa03g03143 480 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 58 441 - -
Csa03g03143 480 Gene3D - 261 323 - -
Csa03g03143 480 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 58 441 - -
Csa03g03143 480 MobiDBLite consensus disorder prediction 333 348 - -
Csa03g03143 480 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677
Csa03g03143 480 MobiDBLite consensus disorder prediction 329 390 - -
Csa03g03143 480 MobiDBLite consensus disorder prediction 1 39 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03143 Csa04g01545 CCT
Csa03g03143 Csa04g01545 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03143 Csa-Chr3:29231761 Csa06g02874 Csa-Chr6:25012164 2.19E-64 dispersed
Csa03g03143 Csa-Chr3:29231761 Csa04g01545 Csa-Chr4:15002380 2.09E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31314 PF07526 POX 1.10E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03143 - - csv:101221128 937.947