Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03162 ATGGCCCGTCTCTGTTTACTCTGTTTCTTCTTCTTCCTCTTTCTCGCCGCCCCCGCCGCATCTCAGCAGCTTTACTTCTCTGGATTTCAAGATGATGCCGCCGTCGCTGCCAACTTAACTCTCACTGACATCGCCAAGATCGAGCAGAACGGAATCTTGAAACTGACAAATGATACCAGTCGATTACAGGGTCATGCCTTTTACAGTTCCCCCGTTCGTTTCAAAAACTCATCCGACGGTAAAGTTTTTTCGTTCTCCACCGCTTTTGTCATCGCCGTCGTCCCTGAGTACCCGACTCTAGGTGGCCATGGCCTCGCCTTCACCATTGCCCCCTCGAAGAACCTCCGTGGACTTCCCAGTCAGTATTTAGGCCTTCTCAATGCGAAAGACGTCGGAAACTTTACGAACCATCTCTTCGCGGTTGAGTTCGATACTGTTCAAGATTTCGAGTTTGCCGATATCAACGATAACCACGTCGGAATTAATCTCAACCATATGATTTCTAATGTCTCCACCACCGCTTCCTATTTCGTCGACGATGGACCCACCAAGCAGAACCTAACCTTGAAAAGTGGGAGGCCGATTCAAGCTTGGGTCGATTACGATTCCTCTGTGAATTCCCTCACGGTGGCACTTTCTCCGTCTTCCACCAAACCCAAGAAGCCGATTCTGTCATTTAATGTAGATCTCTCTCCGATTCTTGACGAGTTTATGTATGTTGGGTTCTCGGCCTCCACTGGGCTTCTTGCAAGTTCGCACTATGTGTTGGGGTGGAGTTTCAGTATGAATGGACAAGCCCGGTCTCTGGATCTGTCTTCTTTGCCTTCTGTTCCAGGTCCGAAGAAAAAGCACACTGCTTTTACAATTGGGATTTCTGTTGCGGCTGTTTTGATTGTGATAATCGCGATTTGTGTTGCTGTTTTAATCATTTGGAAGATAAAAAACGCTGATATAATCGAGGCCTGGGAGCACGAAATCGGTCCTCATCGGTACTCTTACAAGGAGCTCAAGAAAGCCACTAAGCGATTTAGGGATAAAGAGCTTCTAGGGCGCGGTGGGTTTGGGAAAGTTTACAAGGGAACTTTGCCGAATTCAAAAATCCAAGTGGCTGTGAAGCGAATTTCTCACGAATCGAAACAGGGCCTAAGGGAATTTGTGTCGGAAATCGCTAGCATTGGCCGGCTTCGTCACCGGAACTTGGTTCAGTTACTGGGATGGTGTCGCCGCCGTGGCGATCTGCTTCTCGTTTATGATTTTATGGCTAATGGGAGCTTGGATAACTACATTTTCGACGACCCGGATGTGAATTTGAGCTGGCAACAGAGATTCGGAATCATTAAGGGTGTCGCTTCCGGTTTGCTCTACTTGCACGAAGGCTACGAGCAGGTGGTGATTCATAGAGATGTGAAAGCCAGTAATGTCCTGCTCGACAGCGAGATGAATGGAAAGCTCGGCGATTTCGGCCTCGCTCGGCTATATGAACACGGGGCCAACCCGAGCACGACTCGGGTCGTCGGAACTCTTGGATATCTGGCACCGGAGCTTCCCAGAACCGGAAAAGCCACCACCAGCTCAGATGTGTATGCCTTCGGCGCACTTCTGCTAGAAGTGGCCTGCGGGCGGCGGCCAATCGACCCGAAATCTTCGTCAGAAGAGCTGGTGCTGGTGGATTGGGTGTGGGAGAATTACAGGGAAGGGAAATTGCTGGACGTAATGGATCCAAAATTGAAAGGGGATTTCAATGTAGTTGAGGCAATGATGATATTGAAACTGGGGCTGTTTTGTTCGAACGATTCCGCGGCGGCACGACCGAGTATGAGGCAGGTGGTGAGGTTTCTGGAGGGAGAAATGGGAGTTCCGGAGGAGATATCAGCGCCGAAAGTGATGGAAGGAGGGAGGAATGGAGAAGGGTTCGATGATTTTGTGAATTCGTTTGCTTCTTCTTCGTTTAACAAGTTTAGTTCATATTCATCGACTGGTAATAAGGATATGGATATGAGTTTTGCTTCATTTTCAACTTCTCCTCTTTCGCTTCTCAACGGCAGAGACTAA 2052 48.83 MARLCLLCFFFFLFLAAPAASQQLYFSGFQDDAAVAANLTLTDIAKIEQNGILKLTNDTSRLQGHAFYSSPVRFKNSSDGKVFSFSTAFVIAVVPEYPTLGGHGLAFTIAPSKNLRGLPSQYLGLLNAKDVGNFTNHLFAVEFDTVQDFEFADINDNHVGINLNHMISNVSTTASYFVDDGPTKQNLTLKSGRPIQAWVDYDSSVNSLTVALSPSSTKPKKPILSFNVDLSPILDEFMYVGFSASTGLLASSHYVLGWSFSMNGQARSLDLSSLPSVPGPKKKHTAFTIGISVAAVLIVIIAICVAVLIIWKIKNADIIEAWEHEIGPHRYSYKELKKATKRFRDKELLGRGGFGKVYKGTLPNSKIQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDNYIFDDPDVNLSWQQRFGIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDSEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVACGRRPIDPKSSSEELVLVDWVWENYREGKLLDVMDPKLKGDFNVVEAMMILKLGLFCSNDSAAARPSMRQVVRFLEGEMGVPEEISAPKVMEGGRNGEGFDDFVNSFASSSFNKFSSYSSTGNKDMDMSFASFSTSPLSLLNGRD* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29326367 29329259 + CsaV3_3G034680.1 Csa03g03162 524067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03162 683 CDD STKc_IRAK 349 615 - -
Csa03g03162 683 SUPERFAMILY Protein kinase-like (PK-like) 324 626 IPR011009 -
Csa03g03162 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Csa03g03162 683 SMART serkin_6 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03162 683 Pfam Legume lectin domain 23 274 IPR001220 GO:0030246
Csa03g03162 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 5 671 - -
Csa03g03162 683 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Csa03g03162 683 Gene3D Transferase(Phosphotransferase) domain 1 420 629 - -
Csa03g03162 683 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Csa03g03162 683 CDD lectin_legume_LecRK_Arcelin_ConA 26 264 IPR001220 GO:0030246
Csa03g03162 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 282 IPR013320 -
Csa03g03162 683 Pfam Protein tyrosine and serine/threonine kinase 346 612 IPR001245 GO:0004672|GO:0006468
Csa03g03162 683 Gene3D - 21 263 - -
Csa03g03162 683 ProSiteProfiles Protein kinase domain profile. 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03162 683 PANTHER - 5 671 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03042 Csa-Chr3:28756256 Csa03g03162 Csa-Chr3:29326367 0 dispersed
Csa03g03162 Csa-Chr3:29326367 Csa04g01513 Csa-Chr4:14803634 0 dispersed
Csa03g03262 Csa-Chr3:29836435 Csa03g03162 Csa-Chr3:29326367 6.93E-138 dispersed
Csa04g01583 Csa-Chr4:15261555 Csa03g03162 Csa-Chr3:29326367 7.89E-16 dispersed
Csa07g00622 Csa-Chr7:4501633 Csa03g03162 Csa-Chr3:29326367 9.03E-104 dispersed
Csa03g03162 Csa-Chr3:29326367 Csa03g03163 Csa-Chr3:29330047 0 tandem
Csa01g00114 Csa-Chr1:640563 Csa03g03162 Csa-Chr3:29326367 6.88E-166 transposed
Csa01g01233 Csa-Chr1:7648891 Csa03g03162 Csa-Chr3:29326367 2.34E-168 transposed
Csa05g03156 Csa-Chr5:31379831 Csa03g03162 Csa-Chr3:29326367 1.50E-29 transposed
Csa07g00223 Csa-Chr7:1769829 Csa03g03162 Csa-Chr3:29326367 1.58E-114 transposed
Csa07g00449 Csa-Chr7:3219558 Csa03g03162 Csa-Chr3:29326367 1.35E-154 transposed
Csa03g01914 Csa-Chr3:14845713 Csa03g03162 Csa-Chr3:29326367 8.52E-77 transposed
Csa03g03162 Csa-Chr3:29326367 Csa04g01511 Csa-Chr4:14785016 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78046 PF07714 PK_Tyr_Ser-Thr 1.80E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03162 - - csv:101223168 1298.88