Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03163 ATGGCCAACTTCTGTTTCTTTTCTTTTTTAGCCATTTTCTTCTTTACTGTCCCGGCCGCATCTCACAACTTCTTCTACGCCGGTTTTCGCGATCCCACCGCAGCCACCAACTTAACCCTACCGGATATCGCCAAAATCGAAGAGAACGGACTCTTAACGCTTACAGACGATGGCGGATTTCAACAGGGCCATGTGTTCTACGAATCCCCTGTTCGCTTTAGAAACTCTTCCAACGCCGATCCTTTTTCCTTCTCTACCAATTTTGTTTTCGCCATTGTCAACGAATTCCCGAATCTCGGTGGCCATGGCCTCGCCTTCACCATTGCGCCCTCCAAAAACCTCCATGCGCTTCCGGTACAGTTTTTAGGCCTTCTCAATTCGACCAATCACGGAGACCCCTCGAACCATTTATTTGCCGTTGAGTTCGACACCTTCAAAAATGCAGAGTTTGAGGACATCGACGACAACCACATTGGAATTGATCTCAATAGTTTGATCTCCAGTGCCTCCACTACAGCCTCTTATTTCATTAACGACGGGAACACCAAGCAATTTATAAACCTAAAAAGTGGGGCACCAATTCAAGTTTGGATTGATTATGATGCCCCTGTAAATTCTCTCACGGTGGCTCTTTCTCCGTTTTCCACCAAACCTCAGAAGCCAATTCTGTCGTTTAATGTCGACCTCTCTCCAATTCTTTTCGAGTTCATGTACATTGGGTTCTCAGCCTCCACGGGCCAAATGTCAAGTTCTCATTATATTTTAGGTTGGAGTTTCAGTACGGATGGACCATCCCAGTCACTGAATATTGATTCTCTGCCTTCGGTTCCCGGGCCGAAGAATACATACTCTGATTTAGCGATTGGGATTTCAATTCTCATCATTTTGATTGTCATAGCAGGAATCTTTCTTACTCTTTACAAAATAAAAAAGAAGATAGACATAATCGAAGCCTGGGAGCTTGAAATTGGTCCGCATCGGTACCCTTACAAACAACTGGAACTAGCAACCAAACAGTTTAGCAACAGAGAGCTACTAGGACGTGGCGGATTTGGAAAAGTTTACAGAGGAACATTGCCAAATTCAAAAACCCGCGTGGCTGTGAAGCGAATTTCCCACGAATCCAAGCAGGGCCTCCGTGAATTTATGTCGGAAATCACAATCATCGGTCGGCTTCGTCACCGGAACTTAGTTCAATTACTGGGATGGTGTCGTCATGGCGGAAATGAAGATCTGCTTCTTGTTTACGAGTTTATGGTAAATGGGAGTTTGGATAGTTACATATTCGGCAAACCAAAAGTGATTTTGAGTTGGGAACAAAGGTTTAAGATCATAAACGGCGTTGCTTCCGGCCTTCTATACTTGCACGAAGGATACGAACAGGTGGTCATTCATCGAGACGTGAAGGCCAGCAATGTTTTACTCGACGACGAAATGAACGGAAAACTAAGCGATTTCGGCCTCGCCAAACTCTATGAACACGGCGAGAATCCGACAACAACACGGGTCGTCGGAACTGTCGGCTACCTAGCGCCGGAGCTGCACAGAACCGGAAAAGCCACAACCAGCTCTGATGTTTACGCGTTCGGCGCACTTGTGCTTGAAGTGGCCTGCGGCCGCCGGCCAATCGGCCCGAGAGAGGTGCCGGAGGAGATAGTGCTGGTGGACTGGGTTTGGGAGAAATACAAAGAGAAGAAATTATTGGAAGTAATGGACGAGAAATTGAAGGGGGATTTCAATGAGGTCGAGGCAGTGATGATTTTGAAATTGGGGTTGCTGTGTTCGAAGGATTCGGCAGCGGCGCGGCCGAGTATGCGTCTTGTGATGCGGTGTTTGGACGGTGAGATTGGAGTTCCCGACGAGATTACGGGTCCGAGAATGGTGGAAGGAGCCGATGAATTTGTGGATTCGTGGAGTGATAACAGAGACATCACTTCTGCTTCTTTATCCACTTCGTCTCTTTCGATTCTCGACGGTAGAAGTTGA 1986 46.98 MANFCFFSFLAIFFFTVPAASHNFFYAGFRDPTAATNLTLPDIAKIEENGLLTLTDDGGFQQGHVFYESPVRFRNSSNADPFSFSTNFVFAIVNEFPNLGGHGLAFTIAPSKNLHALPVQFLGLLNSTNHGDPSNHLFAVEFDTFKNAEFEDIDDNHIGIDLNSLISSASTTASYFINDGNTKQFINLKSGAPIQVWIDYDAPVNSLTVALSPFSTKPQKPILSFNVDLSPILFEFMYIGFSASTGQMSSSHYILGWSFSTDGPSQSLNIDSLPSVPGPKNTYSDLAIGISILIILIVIAGIFLTLYKIKKKIDIIEAWELEIGPHRYPYKQLELATKQFSNRELLGRGGFGKVYRGTLPNSKTRVAVKRISHESKQGLREFMSEITIIGRLRHRNLVQLLGWCRHGGNEDLLLVYEFMVNGSLDSYIFGKPKVILSWEQRFKIINGVASGLLYLHEGYEQVVIHRDVKASNVLLDDEMNGKLSDFGLAKLYEHGENPTTTRVVGTVGYLAPELHRTGKATTSSDVYAFGALVLEVACGRRPIGPREVPEEIVLVDWVWEKYKEKKLLEVMDEKLKGDFNEVEAVMILKLGLLCSKDSAAARPSMRLVMRCLDGEIGVPDEITGPRMVEGADEFVDSWSDNRDITSASLSTSSLSILDGRS* 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29330047 29332533 + CsaV3_3G034690.1 Csa03g03163 524068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03163 661 PANTHER - 5 642 - -
Csa03g03163 661 ProSiteProfiles Protein kinase domain profile. 340 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03163 661 CDD STKc_IRAK 346 614 - -
Csa03g03163 661 Pfam Protein tyrosine and serine/threonine kinase 343 611 IPR001245 GO:0004672|GO:0006468
Csa03g03163 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Csa03g03163 661 ProSitePatterns Protein kinases ATP-binding region signature. 346 369 IPR017441 GO:0005524
Csa03g03163 661 SMART serkin_6 340 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03163 661 Gene3D Transferase(Phosphotransferase) domain 1 419 622 - -
Csa03g03163 661 CDD lectin_legume_LecRK_Arcelin_ConA 23 263 IPR001220 GO:0030246
Csa03g03163 661 SUPERFAMILY Protein kinase-like (PK-like) 322 623 IPR011009 -
Csa03g03163 661 Pfam Legume lectin domain 22 273 IPR001220 GO:0030246
Csa03g03163 661 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 5 642 - -
Csa03g03163 661 Gene3D - 20 263 - -
Csa03g03163 661 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 279 IPR013320 -
Csa03g03163 661 Gene3D Phosphorylase Kinase; domain 1 326 418 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03163 Csa04g01513 CCT
Csa03g03163 Csa04g01513 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03163 Csa-Chr3:29330047 Csa04g01513 Csa-Chr4:14803634 0 dispersed
Csa03g03162 Csa-Chr3:29326367 Csa03g03163 Csa-Chr3:29330047 0 tandem
Csa03g03163 Csa-Chr3:29330047 Csa03g03164 Csa-Chr3:29333338 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78047 PF07714 PK_Tyr_Ser-Thr 1.70E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03163 - - csv:101204442 1296.95