Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03178 ATGACCCCAGATAGAGAACTTAGAAAGTCGGATCGGTACATAGATAATCGTCCTTTTGGGATTCAAGCACAAGAGGGCACCCATGGCAGGCCTAGATTTCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCTAATCCATCACCGAGCAACATAGCCTCAAGTTCCAGCATTAGAACCTCATCTTCTAATGATGCAAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCGGATGCTGTTTTGACATTCATAAATCAAATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCTGCTGAGAAATCATTCTATGAGGTCCTCGGAAAAAAGTATCCTCCTTCCCCTGAGGTAAATAGATCTCTGGCCAATCAATACACCGATAGCTTGAACGAAGAACTTTGTGGAGATAGTAGTAATTACCTGAGTAATTACAGTAGTACTTCTTATCGTGGCGATGATGATCCTCAAACTCTGAGTGAAGATGTATTTCAAATCAGAAGCGCTTTAGGTGATACCATATCTCCATCATCTAATAGTTCCTCAAATAGTGTAATTAGTGGGGGTGATGGGTGGGTGGACTTCTCTAATAATACAATTCAAGTTCCTGAGCCTAATAACAGAAGCCAATCGATTTGGCAGTTTCAAAAAGGCTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATTTTGAGGTAAATGGGTCAGCAACTCAGGGTCCCGATGAGGGTACGAGCCAAATATATTTGAAGGCAGCTAGAAAGGATCAGAGGAATGTTTTCTCACCTGAATCACGTGGTAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCCGTATTTGCAGAGTCGCCTCTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCTGGAGAGGGACATGAACGGTTAGTTTCATTTCGACAGGAATTACATGATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAGCTAAAAGTGTCTAATGGTGGTAGGGGTCGTCGGAAGAAGCAGAGTGCGAAAAAAGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAACTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGTGATGGAAGTCAGAGGTTAGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGGTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGGACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGCCCATTTAGAAAGATCTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCAGAAAGCGCAACTAGGCTTCATGTCATAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGGTGGACCTCCGAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGTCCTGCAGAGAGAGTTGAGGAGACAGGTCGTCGTTTGGCGGCTTATGCAGAGACTTTCAATGTGCCATTCGAGTATAATGCTATAGCAAAAAAATGGGAATCTGTTACTGTTGAAGATCTCAATATTGATCAAGACGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCAAAAAATTTACTTGATGAGAGCGTTTCTACAGAGAGTGCTAGAAATACTGTTCTTAAATTGGTTCACAAAATTAGTCCTAACTTATTCATCAGTGGCATTGTCAATGGGGCATATAATGCCCCTTTCTTTGTTACTCGATTCCGAGAGGCTTTGTTTCACTTTTCTGCTATTTTTGATATGCTTGAAACCGTTGTACCTCGCGAGGATTACGAGAGAATGCTGTTGGAGAGAGAGATTTTTGGCAGGGAAGCTTTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCGGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTGCTCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGATCAAGTTACCACAGAGATTTTTTGATTGATGAAGATAGCAGATGGTTACTTCAGGGTTGGAAGGGTCGAATTATATATGCCATCTCTACATGGAAACCTTCTGTCGAGTAA 2265 41.68 MTPDRELRKSDRYIDNRPFGIQAQEGTHGRPRFQNTIFSHNFQEFDCLLPNPSPSNIASSSSIRTSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEVNRSLANQYTDSLNEELCGDSSNYLSNYSSTSYRGDDDPQTLSEDVFQIRSALGDTISPSSNSSSNSVISGGDGWVDFSNNTIQVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDFEVNGSATQGPDEGTSQIYLKAARKDQRNVFSPESRGRKNPHDENGDLEEERSSKQAAVFAESPLRSKMFDIVLLCSAGEGHERLVSFRQELHDAKIKSMLQSGQLKVSNGGRGRRKKQSAKKEVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAESATRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAETFNVPFEYNAIAKKWESVTVEDLNIDQDEFLVVNCLYRAKNLLDESVSTESARNTVLKLVHKISPNLFISGIVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDYERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFAPEIFERAVEKVRSSYHRDFLIDEDSRWLLQGWKGRIIYAISTWKPSVE* 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29394049 29396313 - CsaV3_3G034840.1 Csa03g03178 524083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03178 754 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 751 IPR005202 -
Csa03g03178 754 MobiDBLite consensus disorder prediction 274 307 - -
Csa03g03178 754 Pfam GRAS domain family 379 750 IPR005202 -
Csa03g03178 754 ProSiteProfiles GRAS family profile. 370 750 IPR005202 -
Csa03g03178 754 MobiDBLite consensus disorder prediction 278 307 - -
Csa03g03178 754 PANTHER SCARECROW-LIKE PROTEIN 9 37 751 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03178 Csa-Chr3:29394049 Csa06g00941 Csa-Chr6:7561913 5.39E-74 dispersed
Csa01g02434 Csa-Chr1:21584110 Csa03g03178 Csa-Chr3:29394049 0 wgd
Csa03g03178 Csa-Chr3:29394049 Csa06g01475 Csa-Chr6:12522104 3.74E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31317 PF03514 GRAS 4.90E-117 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03178 - - csv:101205887 1472.99