Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03190 ATGAATTTTTCCTCCATTCCTCCTTATCTTGATCCTTCCAACTGGCAACAGGTGGGAACCAGTAGTAGCACTGCACTTAGTTCTCAGCTTCTTCCTCCTCCACCGCCTCCTCCTCCACCTCCTCCTCCTCCTCTGCCTCCTCATGGCGTCGGTGGTGCCGGTTCGATCCGCCCTGGTTCGATGGCCGAACGAGCTCGAATGGCTAATATTCCCATGCCTGAGGCTGCATTGAAATGCCCAAGATGTGAATCGACCAACACTAAGTTTTGTTACTTTAACAACTATAGCCTTACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGAGGCGGGGCCCTACGGAACGTACCGGTCGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGTAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGCCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGTCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGTTTAGTGACTTTGACATCGGAAGTTACAGCTACGGGGGTGGCCTTTCAGCTCCCGCCTCCGCTACCGGTGACCTGAGTTTCCAATTGGGCAACACTAATTTAGGTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCACCAACAATGGAGGCTCCAGCAACAACCTCCTCAATTTCCCTTCTTATCTAGTTTAGACCCTTTCGAAGGCGGTAATGGTGGTGGCGGAGAAGCACCTGGAACCGCGTGGCAAATGAGGCCAAAAGCACCATCAACAAGTTCAAGGAATAATTTAACCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCGGATCAAGTTAATAATAATGTTGGAAGACAATCTATTGGGATTAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTTAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1020 49.61 MNFSSIPPYLDPSNWQQVGTSSSTALSSQLLPPPPPPPPPPPPPLPPHGVGGAGSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSANSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQFSDFDIGSYSYGGGLSAPASATGDLSFQLGNTNLGGGTSIGSLLGFDHQQWRLQQQPPQFPFLSSLDPFEGGNGGGGEAPGTAWQMRPKAPSTSSRNNLTQMGNSVKMEETPDQVNNNVGRQSIGINEQYWSSGSMAWSDLSGFSSSSSTRNPL* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29464183 29466146 + CsaV3_3G034960.1 Csa03g03190 524095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03190 339 SUPERFAMILY Formin homology 2 domain (FH2 domain) 34 44 - -
Csa03g03190 339 MobiDBLite consensus disorder prediction 135 170 - -
Csa03g03190 339 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Csa03g03190 339 MobiDBLite consensus disorder prediction 121 176 - -
Csa03g03190 339 MobiDBLite consensus disorder prediction 1 58 - -
Csa03g03190 339 MobiDBLite consensus disorder prediction 29 49 - -
Csa03g03190 339 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 14 335 - -
Csa03g03190 339 MobiDBLite consensus disorder prediction 1 28 - -
Csa03g03190 339 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Csa03g03190 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 335 IPR045174 GO:0003700|GO:0006355
Csa03g03190 339 MobiDBLite consensus disorder prediction 255 285 - -
Csa03g03190 339 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03190 Csa04g01478 CCT
Csa03g03190 Csa04g01478 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03190 Csa-Chr3:29464183 Csa05g01834 Csa-Chr5:21688794 4.13E-48 dispersed
Csa03g03190 Csa-Chr3:29464183 Csa04g01478 Csa-Chr4:14585987 3.75E-53 wgd
Csa03g03190 Csa-Chr3:29464183 Csa05g00707 Csa-Chr5:4789391 2.95E-59 wgd
Csa03g03190 Csa-Chr3:29464183 Csa06g01499 Csa-Chr6:12669120 2.39E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31319 PF02701 zf-Dof 3.40E-32 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03190 - - csv:101207082 537.724