Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03200 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTGACAAATGAGACGCTGGGGAAAGAGAACGCTTCGAGTACTGAATTGAAGCGAGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCTAAGGAAGTGTCGAATGAAGACGTTCGCTCAGAAGTATCGAATCCTGTAGTTTCTCCGAAAGAGAATCATTTCCATGATATTACTAGCCAGCCTGAGGAGGTAGAAAACACTACCCAAGTTGAGCGTGGGGAGCTTACATCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCGAGCGGTGGAGTTCGTTGCCAGAATGACATGTCTCAAAACGACGTTGATATGTGTGATGTCAATGAGGTTTCTCGGGTTGTGATTGAAATTCCCAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGGTAACAATGGCGCATCCGTTTCAGCAGACAAAGTCCATTCTTATGGAAACTCTGACAGGGACGGTAAACCAGAACCTTCATTGTTGGATGATGCTTGTACGGAAACGTCTGCACATAGCTGTGAAGGTTCTGCTGAGAGCAGCAGGTATTCTTTAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCCAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTAGAGTCAAATATGTATCTACGACAAGCGAGATGAAGCTACAAGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAACGTGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTCGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAAAATGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCGTCTGTTAACATGAATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGACAGTGCAAATATTGTAGTGGAAAATCATGATGTGAAGCTTCCTAAACTGTCACATCCCGTTGAGAGACCAAACCCTAATTTTTCCAATGCCGTCTTGCAACACAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGATTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTAGCATACTTTGTGAAAGGACAGAGAATACTCGGAGGCTTCAAGCAAGGAAATGGTATTCTCTGTAGTCACTGTAATCGAGAGATTAGCCCCTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCACGATATTGCAATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTAGGTTCCAATTCGAAGGCTATTTCTGGAGGTTCTTTGAGTTTTTCAAAGCCAATTGTTTTTAGGTTGACACGAGTTGTTAAAGCACCAGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTCTGCGATCAATGTGAGAGAGAATTCCATGTAGGTTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTGGCCCTTCAGAATACAGTTTTGAATGGGGCACAAATCATTCCAGATTCATTATCAGATTTGATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTTTCCAGAAGACCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTCGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAACTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTTCTCCCTGCAGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGCGAAGAACAGTTGATTAAGTATATGAGGGAGGTCCAGCTGACTATCTTCAATGGAACATCAATGCTAGAGAAGGTGGTGGAGCAATCAACGTTATAA 2529 42.67 MGEEAAGLAAVTNETLGKENASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVVSPKENHFHDITSQPEEVENTTQVERGELTSACSGNSSSEDISSGGVRCQNDMSQNDVDMCDVNEVSRVVIEIPKHASSTGIRKITFKFSKKKGNNGASVSADKVHSYGNSDRDGKPEPSLLDDACTETSAHSCEGSAESSRYSLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLQGIINGGGYMCGCSTCNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNMNSFEAWKASFHQDSANIVVENHDVKLPKLSHPVERPNPNFSNAVLQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGFKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSNSKAISGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRFPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVEQSTL* 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29524995 29532965 + CsaV3_3G035060.1 Csa03g03200 524105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03200 842 Gene3D - 678 837 - -
Csa03g03200 842 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Csa03g03200 842 Pfam Tify domain binding domain 258 312 IPR032308 -
Csa03g03200 842 Pfam Tify domain binding domain 425 474 IPR032308 -
Csa03g03200 842 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 839 - -
Csa03g03200 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Csa03g03200 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 552 IPR013083 -
Csa03g03200 842 SUPERFAMILY FYVE/PHD zinc finger 487 534 IPR011011 -
Csa03g03200 842 MobiDBLite consensus disorder prediction 156 170 - -
Csa03g03200 842 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Csa03g03200 842 PANTHER AUTOIMMUNE REGULATOR 33 839 - -
Csa03g03200 842 SMART PHD_3 491 532 IPR001965 -
Csa03g03200 842 SMART PHD_3 570 627 IPR001965 -
Csa03g03200 842 MobiDBLite consensus disorder prediction 171 185 - -
Csa03g03200 842 Pfam PHD-finger 491 533 IPR019787 -
Csa03g03200 842 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Csa03g03200 842 MobiDBLite consensus disorder prediction 156 188 - -
Csa03g03200 842 MobiDBLite consensus disorder prediction 21 56 - -
Csa03g03200 842 MobiDBLite consensus disorder prediction 1 85 - -
Csa03g03200 842 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Csa03g03200 842 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 726 814 IPR016181 -
Csa03g03200 842 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03200 Csa-Chr3:29524995 Csa06g01247 Csa-Chr6:10468378 0 dispersed
Csa05g00029 Csa-Chr5:137974 Csa03g03200 Csa-Chr3:29524995 9.82E-09 transposed
Csa03g03200 Csa-Chr3:29524995 Csa05g00695 Csa-Chr5:4636359 3.81E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31320 PF16135 TDBD 4.00E-12 No_clan Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03200 - - csv:101207817 1693.71