Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03200 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTGACAAATGAGACGCTGGGGAAAGAGAACGCTTCGAGTACTGAATTGAAGCGAGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCTAAGGAAGTGTCGAATGAAGACGTTCGCTCAGAAGTATCGAATCCTGTAGTTTCTCCGAAAGAGAATCATTTCCATGATATTACTAGCCAGCCTGAGGAGGTAGAAAACACTACCCAAGTTGAGCGTGGGGAGCTTACATCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCGAGCGGTGGAGTTCGTTGCCAGAATGACATGTCTCAAAACGACGTTGATATGTGTGATGTCAATGAGGTTTCTCGGGTTGTGATTGAAATTCCCAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGGTAACAATGGCGCATCCGTTTCAGCAGACAAAGTCCATTCTTATGGAAACTCTGACAGGGACGGTAAACCAGAACCTTCATTGTTGGATGATGCTTGTACGGAAACGTCTGCACATAGCTGTGAAGGTTCTGCTGAGAGCAGCAGGTATTCTTTAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCCAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTAGAGTCAAATATGTATCTACGACAAGCGAGATGAAGCTACAAGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAACGTGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTCGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAAAATGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCGTCTGTTAACATGAATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGACAGTGCAAATATTGTAGTGGAAAATCATGATGTGAAGCTTCCTAAACTGTCACATCCCGTTGAGAGACCAAACCCTAATTTTTCCAATGCCGTCTTGCAACACAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGATTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTAGCATACTTTGTGAAAGGACAGAGAATACTCGGAGGCTTCAAGCAAGGAAATGGTATTCTCTGTAGTCACTGTAATCGAGAGATTAGCCCCTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCACGATATTGCAATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTAGGTTCCAATTCGAAGGCTATTTCTGGAGGTTCTTTGAGTTTTTCAAAGCCAATTGTTTTTAGGTTGACACGAGTTGTTAAAGCACCAGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTCTGCGATCAATGTGAGAGAGAATTCCATGTAGGTTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTGGCCCTTCAGAATACAGTTTTGAATGGGGCACAAATCATTCCAGATTCATTATCAGATTTGATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTTTCCAGAAGACCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTCGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAACTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTTCTCCCTGCAGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGCGAAGAACAGTTGATTAAGTATATGAGGGAGGTCCAGCTGACTATCTTCAATGGAACATCAATGCTAGAGAAGGTGGTGGAGCAATCAACGTTATAA 2529 42.67 MGEEAAGLAAVTNETLGKENASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVVSPKENHFHDITSQPEEVENTTQVERGELTSACSGNSSSEDISSGGVRCQNDMSQNDVDMCDVNEVSRVVIEIPKHASSTGIRKITFKFSKKKGNNGASVSADKVHSYGNSDRDGKPEPSLLDDACTETSAHSCEGSAESSRYSLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLQGIINGGGYMCGCSTCNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNMNSFEAWKASFHQDSANIVVENHDVKLPKLSHPVERPNPNFSNAVLQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGFKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSNSKAISGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRFPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVEQSTL* 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29524995 29532965 + CsaV3_3G035060.1 Csa03g03200 524105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03200 842 Gene3D - 678 837 - -
Csa03g03200 842 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Csa03g03200 842 Pfam Tify domain binding domain 258 312 IPR032308 -
Csa03g03200 842 Pfam Tify domain binding domain 425 474 IPR032308 -
Csa03g03200 842 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 839 - -
Csa03g03200 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Csa03g03200 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 552 IPR013083 -
Csa03g03200 842 SUPERFAMILY FYVE/PHD zinc finger 487 534 IPR011011 -
Csa03g03200 842 MobiDBLite consensus disorder prediction 156 170 - -
Csa03g03200 842 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Csa03g03200 842 PANTHER AUTOIMMUNE REGULATOR 33 839 - -
Csa03g03200 842 SMART PHD_3 491 532 IPR001965 -
Csa03g03200 842 SMART PHD_3 570 627 IPR001965 -
Csa03g03200 842 MobiDBLite consensus disorder prediction 171 185 - -
Csa03g03200 842 Pfam PHD-finger 491 533 IPR019787 -
Csa03g03200 842 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Csa03g03200 842 MobiDBLite consensus disorder prediction 156 188 - -
Csa03g03200 842 MobiDBLite consensus disorder prediction 21 56 - -
Csa03g03200 842 MobiDBLite consensus disorder prediction 1 85 - -
Csa03g03200 842 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Csa03g03200 842 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 726 814 IPR016181 -
Csa03g03200 842 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03200 - - - csv:101207817 1693.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03200 Csa-Chr3:29524995 Csa06g01247 Csa-Chr6:10468378 0 dispersed
Csa05g00029 Csa-Chr5:137974 Csa03g03200 Csa-Chr3:29524995 9.82E-09 transposed
Csa03g03200 Csa-Chr3:29524995 Csa05g00695 Csa-Chr5:4636359 3.81E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03200 . 18 837 PHD Transcription Factor Family AT3G53680 53.5 9.0e-250 860.1
Csa05g00695 . 434 563 PHD Transcription Factor Family AT3G53680 54.6 1.1e-37 155.6
Csa06g01725 . 324 450 PHD Transcription Factor Family AT3G53680 53.1 2.1e-36 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31320 PF16135 TDBD 4.00E-12 No_clan Csa TR