Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03213 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATAATTCCATTTCTAGGTATTCGATCTCGTCGCCGTCGAGAACGCCGGCCTTGACTCCACGCCGGAGCTTCAACGATGCCATGATTGAACAGGCCGTTGAATCTGCGGCCGCGATTGTGATGAAATGGAATCCAGATTCTTCGACTTATGCTAAAGTTACTTCCATGTTCTATGAAGATAAAAGAGAAGCCATGCAGTTTATTAAGCGCGTGAATGATCTTCAAAAAGCGATGCACCTTATGGCTTCTGATGATTCCGTTTCCTCTTCCGATCGCCTTGTTTACGCTCAAGGTCTGATGGAAATAGCCATGAAGAGACTTCAGAAGGAGTTCTATCAAATTCTGTCCATGAATCGTGCTCATCTAGATCCAGAATCTGTTTCCACTAGATCCTCTCGGTGCTCCACCAGATCAAGCACTTCTGTTGATTTCGACGAAGACGGAACCCTAGACGATGAAATCCAAGTCGTAGAAGATTCGATCTCTGAAGTTGAGCAAGTTTCTTTTATTGTTATGGAGGATTTACGAGCCATAGCCGAGTGCATGATCTCCTCTGGCTACGCTAAAGAGTGTGTTAATATGTATAAAGTGATTCGTAAATCGATTATCGATGAAGGTGTGTACCGTCTCGGACTTGAGAAGTTGAGCGCTTCGAGAATCAATAAGATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTTGCAATTCGAACGTTGTTCGTTGGTGAAAGAATTCTCTGCGATCATGTCTTTTCCTCATCTGAATCCATTAGAGAATCCTGTTTTGCCGATATATCCAGAGAAGGCGCTTTGCTTCTGTTTGGATTCCCCGAACTTGTTGCAAAGAGTAAAAAATCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCGCCGAAAATTGGCCGGACGTCGAATCCATTTTCTCATCTGAATCCTCATCTGTAGTTCGATCTCAAGCTCTAACCTCACTCACGAAACTCGGCGAGTTAGTTCGTGCCATTGTTATGGATCTCGAATACTCGATTCAGAAAAATTCATCCAAATCTCCTGTTGCTGGTGGAGGCGTTCATTCCTTAACACTTCTCTCGATGAACTACCTCACTTTCCTCGCTGATTACTGCAACTCTTTGACGGATATTTTCGCCGATTGGAGTCCGCCTGAAAAATCGTCTCTCGAACATATCTTCTTCAGCAGTACTTCAGAAACCGACGATTCTCAATCGTCTTCTGGAATCTCTTTACGAATGGGATGGCTAATTCTAGTTCTTCTCTGTAAACTCGACAACAAAGCGAAACGCTACAAAGACGTTTCTCTTTCGTATCTCTTCCTAGCTAATAATCTTGAACACATCGTCTCTAAAGTCCGATCGTCCAATCTTCAGTACCTTCTCGGCGACGAGTGGATGGCGAAACAGGAAGTGAAAGTAAGGCAATTCGCAGCTAAGTACGAAGCATTAGCTTGGGGAAGAGTCTTCGATTCCTTGCCGGAGAATCCAACCGAGAAATTCTCACAAGAGGAAGCTAAAGAGATCTTCAGGAACTTCAATATGGCGTTCCAAGAAACTCATCGTAAACAGAAATCCTGCGTCATTCCTGATCCAAAGCTTAGAGACGAAGTTAAATTATCCATCGGAAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACCGAGCCCAAAAAGCTTACGGCGGTGCTAATGAAAAACCGTACATCAGATTCTCTCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTCGAACCGTCTGATTGGGCAAGTGTTTCCACATCATCCCCGTCCTCCACCTCCTCCTCTCACCGGCGGGAACCCGGACCCCGTTGA 1926 44.29 MPRKGMRSLLFQFSSPSNNSISRYSISSPSRTPALTPRRSFNDAMIEQAVESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLMASDDSVSSSDRLVYAQGLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDEDGTLDDEIQVVEDSISEVEQVSFIVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSIAENWPDVESIFSSESSSVVRSQALTSLTKLGELVRAIVMDLEYSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYCNSLTDIFADWSPPEKSSLEHIFFSSTSETDDSQSSSGISLRMGWLILVLLCKLDNKAKRYKDVSLSYLFLANNLEHIVSKVRSSNLQYLLGDEWMAKQEVKVRQFAAKYEALAWGRVFDSLPENPTEKFSQEEAKEIFRNFNMAFQETHRKQKSCVIPDPKLRDEVKLSIGRKLVWFYGEFYRAQKAYGGANEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR* 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29599876 29602447 + CsaV3_3G035190.1 Csa03g03213 524118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03213 641 Pfam Exo70 exocyst complex subunit 250 611 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa03g03213 641 Gene3D Exocyst complex component Exo70 57 619 - -
Csa03g03213 641 SUPERFAMILY Cullin repeat-like 76 613 IPR016159 -
Csa03g03213 641 MobiDBLite consensus disorder prediction 619 641 - -
Csa03g03213 641 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 624 - -
Csa03g03213 641 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 624 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03213 Csa-Chr3:29599876 Csa03g02774 Csa-Chr3:26573177 1.95E-95 dispersed
Csa03g03213 Csa-Chr3:29599876 Csa04g01453 Csa-Chr4:14408827 7.29E-174 wgd
Csa03g03213 Csa-Chr3:29599876 Csa05g00661 Csa-Chr5:4442429 0 wgd
Csa03g03213 Csa-Chr3:29599876 Csa06g01715 Csa-Chr6:15102299 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03213 K07195 - csv:101208543 1163.29