Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03224 ATGGTTAAACCCTGCTGGAAGCCTCATGATGATGGCGATTCAAACGGACGAGTTGATGGATTGTTGTGGTCTAAGGATCTGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTAATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGACCAATCCAGGTCCGCTGGGAACCTTTGTCGGAGTCTATGACGGCCATGGCGGAACTGAAGCTTCACGGTTTGTCAACGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTACACCAAGACATATCAGAAAATGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAAGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTCTGGTAGGGATCATCTGCAATGGACAACTATATATTGCAAATGCAGGCGATTCACGAGTAGTGCTTGGGAGAACTGAGAGAGCCACTAGAGAAGTGATTGCCATTCAATTGTCCACAGAACACAACGCAAGCATAGAGTCTGTGAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCCCAGATTGTGATCCTAAAACACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGTGATGCATATTTGAAAAAAGCAAAGTTCAACAGACCACCTCTCCCCCCTAAATTTCAACTGCCCGAGCCATTTTACAAACCGATTCTCAGTGCAGAACCGTCAATATTAGTACACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGTCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCCCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGTAGGCCCTCCCCTTGCTCCTTGTCAATCAAAGGAGGAGAAGGTCTCCCCTCCTCAGCGAACTCCTAG 1113 44.74 MVKPCWKPHDDGDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNPGPLGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQDISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIKGGEGLPSSANS* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29655759 29657232 + CsaV3_3G035300.1 Csa03g03224 524129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03224 370 SMART PP2C_4 12 340 IPR001932 -
Csa03g03224 370 CDD PP2Cc 32 342 IPR001932 -
Csa03g03224 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Csa03g03224 370 SUPERFAMILY PP2C-like 32 344 IPR036457 -
Csa03g03224 370 Pfam Protein phosphatase 2C 66 311 IPR001932 -
Csa03g03224 370 Gene3D - 23 349 IPR036457 -
Csa03g03224 370 PANTHER PROTEIN PHOSPHATASE 2C 67-RELATED 3 364 - -
Csa03g03224 370 PANTHER ALPHABET, ISOFORM E-RELATED 3 364 - -
Csa03g03224 370 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03224 Csa-Chr3:29655759 Csa06g03363 Csa-Chr6:28014814 3.61E-180 dispersed
Csa03g03224 Csa-Chr3:29655759 Csa05g00646 Csa-Chr5:4308076 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03224 K01102 - csv:101210750 726.857