Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03227 ATGGCTACTGCAACTGTCGTATTGGAAGTTCGTCCCCCATCATTGGAAGCCGACGCCGAACAACCTCCGCTCTTCGACGGAACCACCAGGTTATATATGGCTTACTATTGCCCATTTGCACAGCGTGCTTGGATCACAAGAAATTATAAGGGATTACAAGATAAAATAAAATTAGTGCCTCTGAACCTTCAAAACAGGCCTGCTTGGTATAAGGAAAAAGTGAACCCTACAAACAAGGTGCCAGCGTTGGAACACAATGGGAAAGTTATTGGTGAAAGCCTTGATTTGATCAAATACATAGATAGCAACTTTGAAGGCCCTTCTCTTTTCCCAGACGATGCTGCTAAAAGACAATTCGGTGAAAAGTTGATAGCTTATACTGATACCTTCACTGGGGCAGTGTACCCTTCATTTAAGGGTGACCCAGCTAAGGAAGCAGGTCCTCAGTTTGATTACTTGGAGAACGCTCTGCAAAAATTTGATGATGGCCCATTCCTTTTGGGTCAATTCAGTGGGGTGGACATTGCATACATCACATTTATCGAAAGATTTCATGTATTTTTAAACGAGGTTTTCAAGTATGATATCACAGAAGGAAGACCTCATCTAGCTACATGGATTGAGAAATTCGAGAAGATTGATGGTTACAAGCAAACAAAATATGACCCTACAGCGATTGTTGAACTTTACAAGAAGCGCTTTATGGCTTAA 711 41.63 MATATVVLEVRPPSLEADAEQPPLFDGTTRLYMAYYCPFAQRAWITRNYKGLQDKIKLVPLNLQNRPAWYKEKVNPTNKVPALEHNGKVIGESLDLIKYIDSNFEGPSLFPDDAAKRQFGEKLIAYTDTFTGAVYPSFKGDPAKEAGPQFDYLENALQKFDDGPFLLGQFSGVDIAYITFIERFHVFLNEVFKYDITEGRPHLATWIEKFEKIDGYKQTKYDPTAIVELYKKRFMA* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29660892 29664112 + CsaV3_3G035330.1 Csa03g03227 524132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03227 236 Gene3D Glutaredoxin 2 105 - -
Csa03g03227 236 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 27 108 IPR004045 -
Csa03g03227 236 SFLD Glutathione Transferase (cytosolic) 30 211 IPR040079 -
Csa03g03227 236 PANTHER GLUTATHIONE S-TRANSFERASE L1 3 235 IPR044629 GO:0004364
Csa03g03227 236 Pfam Glutathione S-transferase, N-terminal domain 31 107 IPR004045 -
Csa03g03227 236 Gene3D - 106 236 - -
Csa03g03227 236 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 3 235 - -
Csa03g03227 236 Pfam Glutathione S-transferase, C-terminal domain 149 208 - -
Csa03g03227 236 CDD GST_C_Lambda 113 231 - -
Csa03g03227 236 SFLD Main (cytGST) 30 211 - -
Csa03g03227 236 SUPERFAMILY GST C-terminal domain-like 104 234 IPR036282 -
Csa03g03227 236 SUPERFAMILY Thioredoxin-like 21 109 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03227 Csa-Chr3:29660892 Csa03g03230 Csa-Chr3:29677457 1.16E-121 dispersed
Csa03g03227 Csa-Chr3:29660892 Csa03g03229 Csa-Chr3:29669445 2.74E-125 proximal
Csa03g02084 Csa-Chr3:17117911 Csa03g03227 Csa-Chr3:29660892 4.26E-08 transposed
Csa05g00668 Csa-Chr5:4484418 Csa03g03227 Csa-Chr3:29660892 1.01E-07 transposed
Csa03g03227 Csa-Chr3:29660892 Csa05g00645 Csa-Chr5:4299122 7.49E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03227 K00799 - csv:101210004 489.189