Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03229 ATGGCTGCTCTTGTGGAAGAGATTTTACCTCCGTCGTTGGATGCTACTGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTGTATACTGCTTACATTTGCCCCTATGCTCAACGTGTGTGGATCACCCGGAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAATCTTTTTAACAGGCCTGACTGGTATAAGGAGAAAGTATACTCTCCAAACAAGGTGCCATCTCTAGAACACAACGGGAAAGTTATTGGAGAAAGTCTTGATCTGATGAAATATGTTGATAGCCACTTTGAAGGACCCTCTCTTCTCCCAAATGATCCTGCTAAAAGGGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACATTTAACGGTGCCATGATCTCTTCGTTTAAAGGTGACACTGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCCTCCTTGGAGAGATCAGTCTGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCAGCGTTTTCTTATTAGAGGTTTTCAAAATTGACATCACTAAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGTTCAATAAGATTGATGCGTACAAACAAACAAAAGCTGATCCCAAACTAGTTGTTGAGGTTTACACAAAGCGATTTTTGCTTCCACCAGAATCTCTTCTTCGATTCAAGTCTGTTTGCAAATCTTGGTATGCTCTTATCAACGACCCTAAATTTGTAACTAAACATCTTTTAGATTCTTTTTCCCACAAACAAGTTCTCATTAAGCGTGTCATCACCAACAACTCTGGCAAAAAAGAGCACGTGTTCTCCATCCTCAAATTTTCTCTTGATCGATCTGTGTCATCTGTTCTCAACGTTCCTCTACCATTTCCTGAGAATCTTCAAGCTTTTCAAATTAGGGGCCATTCTCACGGCTTAATTTGTCTAATTAGTGTTGATAATCCTGATATTTTTCTTTCTAATCCCATGACGAGGCAGTTTCATAAACTTCCACCAACAATTATTGTGGACCCTGAACCTCAAGATGTTGATTTAATGCCAGAGGCTATCGGGTTTGGGTATGATGTGAAATGTGGGAATTTCAAAGTGGTTAGAGTTGTGAGTCATTGGATTGACTTGTTTGTTATCCTTCGAGAGTGGAAATTTATGATTTGA 1212 40.1 MAALVEEILPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLFNRPDWYKEKVYSPNKVPSLEHNGKVIGESLDLMKYVDSHFEGPSLLPNDPAKREYAEELLSYSDTFNGAMISSFKGDTAKEAGAQFDYLENALQKFDGPFLLGEISLVDIAYIPFVERFSVFLLEVFKIDITKGRPKLAAWIEEFNKIDAYKQTKADPKLVVEVYTKRFLLPPESLLRFKSVCKSWYALINDPKFVTKHLLDSFSHKQVLIKRVITNNSGKKEHVFSILKFSLDRSVSSVLNVPLPFPENLQAFQIRGHSHGLICLISVDNPDIFLSNPMTRQFHKLPPTIIVDPEPQDVDLMPEAIGFGYDVKCGNFKVVRVVSHWIDLFVILREWKFMI* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29669445 29675299 + CsaV3_3G035350.1 Csa03g03229 524134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03229 403 Pfam Glutathione S-transferase, C-terminal domain 143 205 - -
Csa03g03229 403 Pfam Glutathione S-transferase, N-terminal domain 29 105 IPR004045 -
Csa03g03229 403 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 106 IPR004045 -
Csa03g03229 403 SFLD Main (cytGST) 28 207 - -
Csa03g03229 403 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 3 232 - -
Csa03g03229 403 SUPERFAMILY GST C-terminal domain-like 102 231 IPR036282 -
Csa03g03229 403 Pfam F-box domain 233 259 IPR001810 GO:0005515
Csa03g03229 403 PANTHER GLUTATHIONE S-TRANSFERASE L1 3 232 IPR044629 GO:0004364
Csa03g03229 403 SUPERFAMILY F-box domain 233 286 IPR036047 GO:0005515
Csa03g03229 403 Gene3D Glutaredoxin 1 103 - -
Csa03g03229 403 Gene3D - 231 257 - -
Csa03g03229 403 SUPERFAMILY Thioredoxin-like 20 107 IPR036249 -
Csa03g03229 403 SFLD Glutathione Transferase (cytosolic) 28 207 IPR040079 -
Csa03g03229 403 CDD GST_C_Lambda 111 227 - -
Csa03g03229 403 Gene3D - 104 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03229 Csa-Chr3:29669445 Csa05g00645 Csa-Chr5:4299122 2.37E-110 dispersed
Csa03g03227 Csa-Chr3:29660892 Csa03g03229 Csa-Chr3:29669445 2.74E-125 proximal
Csa03g03228 Csa-Chr3:29666417 Csa03g03229 Csa-Chr3:29669445 5.22E-71 tandem
Csa03g03229 Csa-Chr3:29669445 Csa03g03230 Csa-Chr3:29677457 2.90E-140 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03229 K00799 - csv:101211241 471.47