Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03229 ATGGCTGCTCTTGTGGAAGAGATTTTACCTCCGTCGTTGGATGCTACTGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTGTATACTGCTTACATTTGCCCCTATGCTCAACGTGTGTGGATCACCCGGAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAATCTTTTTAACAGGCCTGACTGGTATAAGGAGAAAGTATACTCTCCAAACAAGGTGCCATCTCTAGAACACAACGGGAAAGTTATTGGAGAAAGTCTTGATCTGATGAAATATGTTGATAGCCACTTTGAAGGACCCTCTCTTCTCCCAAATGATCCTGCTAAAAGGGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACATTTAACGGTGCCATGATCTCTTCGTTTAAAGGTGACACTGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCCTCCTTGGAGAGATCAGTCTGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCAGCGTTTTCTTATTAGAGGTTTTCAAAATTGACATCACTAAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGTTCAATAAGATTGATGCGTACAAACAAACAAAAGCTGATCCCAAACTAGTTGTTGAGGTTTACACAAAGCGATTTTTGCTTCCACCAGAATCTCTTCTTCGATTCAAGTCTGTTTGCAAATCTTGGTATGCTCTTATCAACGACCCTAAATTTGTAACTAAACATCTTTTAGATTCTTTTTCCCACAAACAAGTTCTCATTAAGCGTGTCATCACCAACAACTCTGGCAAAAAAGAGCACGTGTTCTCCATCCTCAAATTTTCTCTTGATCGATCTGTGTCATCTGTTCTCAACGTTCCTCTACCATTTCCTGAGAATCTTCAAGCTTTTCAAATTAGGGGCCATTCTCACGGCTTAATTTGTCTAATTAGTGTTGATAATCCTGATATTTTTCTTTCTAATCCCATGACGAGGCAGTTTCATAAACTTCCACCAACAATTATTGTGGACCCTGAACCTCAAGATGTTGATTTAATGCCAGAGGCTATCGGGTTTGGGTATGATGTGAAATGTGGGAATTTCAAAGTGGTTAGAGTTGTGAGTCATTGGATTGACTTGTTTGTTATCCTTCGAGAGTGGAAATTTATGATTTGA 1212 40.1 MAALVEEILPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLFNRPDWYKEKVYSPNKVPSLEHNGKVIGESLDLMKYVDSHFEGPSLLPNDPAKREYAEELLSYSDTFNGAMISSFKGDTAKEAGAQFDYLENALQKFDGPFLLGEISLVDIAYIPFVERFSVFLLEVFKIDITKGRPKLAAWIEEFNKIDAYKQTKADPKLVVEVYTKRFLLPPESLLRFKSVCKSWYALINDPKFVTKHLLDSFSHKQVLIKRVITNNSGKKEHVFSILKFSLDRSVSSVLNVPLPFPENLQAFQIRGHSHGLICLISVDNPDIFLSNPMTRQFHKLPPTIIVDPEPQDVDLMPEAIGFGYDVKCGNFKVVRVVSHWIDLFVILREWKFMI* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29669445 29675299 + CsaV3_3G035350.1 Csa03g03229 524134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03229 403 Pfam Glutathione S-transferase, C-terminal domain 143 205 - -
Csa03g03229 403 Pfam Glutathione S-transferase, N-terminal domain 29 105 IPR004045 -
Csa03g03229 403 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 106 IPR004045 -
Csa03g03229 403 SFLD Main (cytGST) 28 207 - -
Csa03g03229 403 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 3 232 - -
Csa03g03229 403 SUPERFAMILY GST C-terminal domain-like 102 231 IPR036282 -
Csa03g03229 403 Pfam F-box domain 233 259 IPR001810 GO:0005515
Csa03g03229 403 PANTHER GLUTATHIONE S-TRANSFERASE L1 3 232 IPR044629 GO:0004364
Csa03g03229 403 SUPERFAMILY F-box domain 233 286 IPR036047 GO:0005515
Csa03g03229 403 Gene3D Glutaredoxin 1 103 - -
Csa03g03229 403 Gene3D - 231 257 - -
Csa03g03229 403 SUPERFAMILY Thioredoxin-like 20 107 IPR036249 -
Csa03g03229 403 SFLD Glutathione Transferase (cytosolic) 28 207 IPR040079 -
Csa03g03229 403 CDD GST_C_Lambda 111 227 - -
Csa03g03229 403 Gene3D - 104 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03229 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101211241 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03229 Csa-Chr3:29669445 Csa05g00645 Csa-Chr5:4299122 2.37E-110 dispersed
Csa03g03227 Csa-Chr3:29660892 Csa03g03229 Csa-Chr3:29669445 2.74E-125 proximal
Csa03g03228 Csa-Chr3:29666417 Csa03g03229 Csa-Chr3:29669445 5.22E-71 tandem
Csa03g03229 Csa-Chr3:29669445 Csa03g03230 Csa-Chr3:29677457 2.90E-140 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g01815 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.7e-64 242.7
Csa07g01817 . 1 210 Glutathione S-transferase Gene Family AT4G02520 58.7 6.5e-64 240.7
Csa07g01816 . 18 176 Glutathione S-transferase Gene Family AT4G02520 58.0 3.0e-45 178.7
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 4.5e-65 244.6
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT2G02930 59.5 4.5e-65 244.6
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT2G02930 59.5 2.5e-47 185.7
Csa07g01815 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.7 3.4e-59 225.3
Csa07g01817 . 6 215 Glutathione S-transferase Gene Family AT1G02950 53.1 4.9e-58 221.5
Csa07g01816 . 18 173 Glutathione S-transferase Gene Family AT1G02950 54.1 4.9e-42 168.3
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 2.4e-63 238.8
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.3 2.4e-63 238.8
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT1G02930 56.9 5.1e-45 177.9
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.7 7.6e-65 243.8
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT1G02920 55.2 3.8e-64 241.5
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT1G02920 58.8 2.4e-47 185.7
Csa07g01815 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.8 1.4e-68 256.5
Csa07g01817 . 4 215 Glutathione S-transferase Gene Family AT2G47730 57.7 1.9e-65 246.1
Csa07g01817 . 20 215 Glutathione S-transferase Gene Family AT1G49860 50.5 5.1e-47 184.9
Csa04g01557 . 1 209 Glutathione S-transferase Gene Family AT2G29450 50.5 3.3e-50 195.3
Csa03g00999 . 169 363 Glutathione S-transferase Gene Family AT2G29450 50.5 1.3e-49 193.4
Csa04g00769 . 3 145 Glutathione S-transferase Gene Family AT2G29420 53.1 1.7e-38 156.4
Csa04g01568 . 3 215 Glutathione S-transferase Gene Family AT3G09270 54.0 2.1e-65 245.7
Csa04g01557 . 1 221 Glutathione S-transferase Gene Family AT3G09270 54.8 1.8e-64 242.7
Csa04g01558 . 4 225 Glutathione S-transferase Gene Family AT3G09270 51.1 9.9e-63 236.9
Csa04g01561 . 3 215 Glutathione S-transferase Gene Family AT3G09270 52.6 3.8e-62 235.0
Csa04g01569 . 3 222 Glutathione S-transferase Gene Family AT3G09270 53.4 1.9e-61 232.6
Csa04g01555 . 2 216 Glutathione S-transferase Gene Family AT3G09270 51.4 2.7e-60 228.8
Csa04g01560 . 1 218 Glutathione S-transferase Gene Family AT3G09270 53.0 4.6e-60 228.0
Csa04g01567 . 3 218 Glutathione S-transferase Gene Family AT3G09270 50.7 1.0e-59 226.9
Csa03g00999 . 169 372 Glutathione S-transferase Gene Family AT3G09270 51.9 2.8e-57 218.8
Csa04g00772 . 4 218 Glutathione S-transferase Gene Family AT1G78380 71.2 7.4e-87 317.0
Csa04g00770 . 1 216 Glutathione S-transferase Gene Family AT1G78380 67.1 1.2e-84 309.7
Csa05g01429 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.9e-66 249.2
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G78380 66.0 1.7e-51 199.5
Csa04g00772 . 8 215 Glutathione S-transferase Gene Family AT1G78370 65.4 1.9e-79 292.4
Csa04g00770 . 1 214 Glutathione S-transferase Gene Family AT1G78370 61.2 4.4e-76 281.2
Csa05g01429 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 2.8e-62 235.3
Csa04g00769 . 7 147 Glutathione S-transferase Gene Family AT1G78370 61.0 5.7e-47 184.5
Csa04g00770 . 1 216 Glutathione S-transferase Gene Family AT1G78340 62.5 6.2e-78 287.3
Csa04g00772 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 6.2e-78 287.3
Csa05g01429 . 4 219 Glutathione S-transferase Gene Family AT1G78340 52.8 1.8e-61 232.6
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G78340 62.6 2.9e-51 198.7
Csa03g00999 . 169 314 Glutathione S-transferase Gene Family AT1G78340 51.7 3.9e-40 161.8
Csa04g00772 . 3 218 Glutathione S-transferase Gene Family AT1G78320 51.4 8.3e-58 220.3
Csa04g00772 . 1 217 Glutathione S-transferase Gene Family AT1G17180 69.1 2.2e-86 315.5
Csa04g00770 . 1 218 Glutathione S-transferase Gene Family AT1G17180 61.9 2.5e-82 302.0
Csa05g01429 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 8.6e-67 250.4
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G17180 62.6 6.6e-51 197.6
Csa04g00772 . 1 215 Glutathione S-transferase Gene Family AT1G17190 60.0 4.2e-74 274.6
Csa04g00770 . 3 217 Glutathione S-transferase Gene Family AT1G17190 54.9 1.7e-70 262.7
Csa04g00769 . 2 176 Glutathione S-transferase Gene Family AT1G17190 54.3 5.2e-48 188.0
Csa04g00770 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.6 9.4e-69 256.9
Csa04g00772 . 1 216 Glutathione S-transferase Gene Family AT3G43800 51.8 9.1e-64 240.4
Csa05g01429 . 1 219 Glutathione S-transferase Gene Family AT3G43800 50.9 1.2e-60 229.9
Csa04g00769 . 3 147 Glutathione S-transferase Gene Family AT3G43800 56.8 4.0e-43 171.8
Csa04g00772 . 3 216 Glutathione S-transferase Gene Family AT1G53680 55.1 2.1e-65 245.7
Csa04g00770 . 4 218 Glutathione S-transferase Gene Family AT1G53680 54.4 1.1e-64 243.4
Csa05g01429 . 1 225 Glutathione S-transferase Gene Family AT1G53680 54.6 1.4e-64 243.0
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G53680 56.3 4.5e-39 158.3
Csa02g01635 . 51 222 Glutathione S-transferase Gene Family AT2G02390 66.3 5.7e-59 224.2
Csa02g01638 . 50 218 Glutathione S-transferase Gene Family AT2G02390 63.3 5.3e-57 217.6
Csa03g00969 . 61 227 Glutathione S-transferase Gene Family AT2G02390 50.3 3.0e-44 175.3
Csa02g01635 . 8 220 Glutathione S-transferase Gene Family AT2G02380 63.8 5.6e-74 274.2
Csa02g01638 . 6 218 Glutathione S-transferase Gene Family AT2G02380 57.7 3.2e-69 258.5
Csa03g00969 . 20 226 Glutathione S-transferase Gene Family AT2G02380 51.7 6.9e-56 214.2
Csa04g00600 . 1 237 Glutathione S-transferase Gene Family AT5G41210 70.0 9.7e-96 346.7
Csa04g00600 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 4.1e-92 335.9
Csa03g03227 . 6 235 Glutathione S-transferase Gene Family AT5G02780 66.7 6.1e-87 317.4
Csa03g03229 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.0 1.3e-81 299.7
Csa05g00645 . 77 296 Glutathione S-transferase Gene Family AT5G02780 63.5 5.2e-78 287.7
Csa03g03230 . 14 228 Glutathione S-transferase Gene Family AT5G02780 63.6 3.4e-77 285.0
Csa05g00645 . 54 294 Glutathione S-transferase Gene Family AT3G55040 63.6 6.0e-84 307.8
Csa03g03227 . 6 236 Glutathione S-transferase Gene Family AT3G55040 58.4 1.2e-76 283.5
Csa03g03229 . 3 230 Glutathione S-transferase Gene Family AT3G55040 58.1 1.3e-75 280.0
Csa03g03230 . 4 228 Glutathione S-transferase Gene Family AT3G55040 55.8 2.8e-73 272.3
Csa03g03227 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.5 3.9e-94 341.3
Csa03g03229 . 7 232 Glutathione S-transferase Gene Family AT5G02790 68.7 3.8e-89 324.7
Csa03g03230 . 6 228 Glutathione S-transferase Gene Family AT5G02790 64.7 3.1e-83 305.1
Csa05g00645 . 69 296 Glutathione S-transferase Gene Family AT5G02790 61.1 1.9e-80 295.8
Csa05g00668 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.2 1.0e-80 296.6
Csa03g02084 . 119 326 Glutathione S-transferase Gene Family AT1G19570 60.3 5.9e-73 270.8
Csa05g00668 . 1 211 Glutathione S-transferase Gene Family AT1G75270 70.8 8.8e-85 310.1
Csa03g02084 . 119 326 Glutathione S-transferase Gene Family AT1G75270 62.2 4.1e-74 274.6
Csa03g02084 . 63 329 Glutathione S-transferase Gene Family AT5G16710 66.9 9.6e-102 366.7
Csa05g00668 . 3 210 Glutathione S-transferase Gene Family AT5G16710 60.6 1.7e-74 276.2
Csa04g01774 . 1 268 Glutathione S-transferase Gene Family AT1G77290 68.7 1.2e-107 386.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000664 2 7 0 1 1 2 3 2 3 3 1 3 2 4 4 3 3 4 2 2 4 3 3 4 5 3 2 8 6 4 94