Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03230 | ATGGCTTCCGCAGACGTGCAAGAAATTCCACCTCCGTCCTTGGATGCCACCGCCGAACAACCTCCCTTGTTTGATGGAACTACCAGGTTGTATACTGCTTACATTTGCCCTTATGCACACCGTGCTTGGATCATCCGAAATTACAAGGGACTACAACATAAAATTAAGCTAGTTCCTCTCGATCTTCGTAATAGACCTGACTGGTATAAGGAAAAAGTATACCCTACGAACAAGGTTCCATCTCTGGAACATAATGGAAAGGTTATTGGAGAAAGTCTTGATCTGCTCAAATATATCGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGGTAAAAGAGAATTTGCTGAAGAGTTGCTTTCCTACAGCGAAACATTTAACGGCGCTATAATCCATTCGTTCAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAACGCTTTGGGACAATTTGATGGCCCGTTCCTCGTCGGAGAAATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAATATTGACATCACGGAAGGAAGGCCCAAATTAGTTGCATGGATTGAGGAGTTCAATAAGATGGATGCGTACAAGCAAACAAAAGTCGATCCCAAGCTGGTCGTTGACATTTATACAATGTATGCCATTATTATCAAAATCAAGCACATCAATTAG | 726 | 42.15 | MASADVQEIPPPSLDATAEQPPLFDGTTRLYTAYICPYAHRAWIIRNYKGLQHKIKLVPLDLRNRPDWYKEKVYPTNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDDPGKREFAEELLSYSETFNGAIIHSFKGDTAKEAGAQFDYLENALGQFDGPFLVGEISQVDIAYIPFVERFHIFLLEALNIDITEGRPKLVAWIEEFNKMDAYKQTKVDPKLVVDIYTMYAIIIKIKHIN* | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 29677457 | 29680745 | + | CsaV3_3G035360.1 | Csa03g03230 | 524135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03230 | 241 | Pfam | Glutathione S-transferase, N-terminal domain | 30 | 106 | IPR004045 | - | |
Csa03g03230 | 241 | SFLD | Glutathione Transferase (cytosolic) | 29 | 208 | IPR040079 | - | |
Csa03g03230 | 241 | SUPERFAMILY | Thioredoxin-like | 21 | 108 | IPR036249 | - | |
Csa03g03230 | 241 | SFLD | Main (cytGST) | 29 | 208 | - | - | |
Csa03g03230 | 241 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa03g03230 | 241 | Gene3D | Glutaredoxin | 1 | 104 | - | - | |
Csa03g03230 | 241 | PANTHER | GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC | 3 | 228 | - | - | |
Csa03g03230 | 241 | Gene3D | - | 105 | 234 | - | - | |
Csa03g03230 | 241 | SUPERFAMILY | GST C-terminal domain-like | 103 | 231 | IPR036282 | - | |
Csa03g03230 | 241 | Pfam | Glutathione S-transferase, C-terminal domain | 144 | 206 | - | - | |
Csa03g03230 | 241 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 26 | 107 | IPR004045 | - | |
Csa03g03230 | 241 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 3 | 228 | IPR044629 | GO:0004364 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03227 | Csa-Chr3:29660892 | Csa03g03230 | Csa-Chr3:29677457 | 1.16E-121 | dispersed | |
Csa03g03230 | Csa-Chr3:29677457 | Csa05g00645 | Csa-Chr5:4299122 | 2.45E-106 | dispersed | |
Csa03g03229 | Csa-Chr3:29669445 | Csa03g03230 | Csa-Chr3:29677457 | 2.90E-140 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03230 | K00799 | - | csv:101210504 | 473.781 |