Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03235 ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAACAAGTTGGAATCTCAGAACACTCGAGTTGATCTGATCAACGGGAAACTAAAGACAATTTCCTCCTTCAGTGAAACCTCCAAAGGTGGAGGATCTGAACCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTAGGAGAAGGAGGTTTTGGTAGAGTTTACAAAGGAAAGTTGGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTTGCAAGGGAACAGAGAATTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTTAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAATTTATAGATTGGAATACAAGAATGAGAATAGCTGCTGGGGCAGCTCGAGGATTGGAATACTTGCACGACAAAGCTAGCCCGCCAGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGACAAAGGTTATCATCCCAAGCTGTCTGATTTTGGATTAGCTAAACTTGGGCCCGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGTGCTCCCGAATATGCAATGACTGGTCAGTTAACTCTCAAGTCAGATGTTTATAGCTTTGGCGTTGTTCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAAAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTGTTTAAAGACCGTCTGAGATTTGCGCAAATGGCCGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTATATCAAGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCTGTGATAGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCTCAAAGATACGACCCTGGTATTATTTTACCCAACGACTCCCCTGGATCTGCCTATACTCCTCCAAGAGCCAACCGAGATTCTGATAGGAAACTTAATGGAGGTAGAAGATACGACAGGAATCCAACTAAACGACTATAA 1188 41.84 MIWIPCSGNSNRKLKSKKLNKLESQNTRVDLINGKLKTISSFSETSKGGGSEPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKFIDWNTRMRIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSKAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYDPGIILPNDSPGSAYTPPRANRDSDRKLNGGRRYDRNPTKRL* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29698154 29702633 - CsaV3_3G035410.1 Csa03g03235 524140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03235 395 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Csa03g03235 395 SMART serkin_6 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03235 395 Gene3D Transferase(Phosphotransferase) domain 1 148 355 - -
Csa03g03235 395 PANTHER OS07G0668900 PROTEIN 1 383 - -
Csa03g03235 395 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Csa03g03235 395 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03235 395 Pfam Protein kinase domain 76 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03235 395 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Csa03g03235 395 MobiDBLite consensus disorder prediction 359 395 - -
Csa03g03235 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Csa03g03235 395 CDD STKc_IRAK 77 345 - -
Csa03g03235 395 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 383 - -
Csa03g03235 395 MobiDBLite consensus disorder prediction 373 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03235 Csa-Chr3:29698154 Csa06g00794 Csa-Chr6:6377052 0 dispersed
Csa01g01012 Csa-Chr1:6279057 Csa03g03235 Csa-Chr3:29698154 2.62E-62 transposed
Csa01g03377 Csa-Chr1:30405029 Csa03g03235 Csa-Chr3:29698154 2.37E-145 transposed
Csa03g02358 Csa-Chr3:21317706 Csa03g03235 Csa-Chr3:29698154 5.34E-64 transposed
Csa03g04036 Csa-Chr3:35232968 Csa03g03235 Csa-Chr3:29698154 2.14E-90 transposed
Csa05g01587 Csa-Chr5:18743303 Csa03g03235 Csa-Chr3:29698154 1.21E-64 transposed
Csa05g02172 Csa-Chr5:24710000 Csa03g03235 Csa-Chr3:29698154 5.29E-51 transposed
Csa01g01328 Csa-Chr1:8562065 Csa03g03235 Csa-Chr3:29698154 7.13E-95 transposed
Csa03g03235 Csa-Chr3:29698154 Csa05g00641 Csa-Chr5:4259160 0 wgd
Csa03g03235 Csa-Chr3:29698154 Csa06g01695 Csa-Chr6:14910133 1.50E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78050 PF00069 Pkinase 1.40E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03235 - - csv:101211491 778.089