Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03241 ATGCTGGATCTTAACCTCGAAGTTGTTTCCTCTGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGACAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCTTCTATCGTTAACGGCGATCTTTCTGCTAGTACCACCGGCGACGAGGACTCTTCTTCTAACGCTGACGAGGCGTTTCCGTTTGCCTTTGGAAAAGACTACGCGGATCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTTGATGACCACCGCGATCAGACGATGGTGCTCTTCCCGTTAACCGGTGGGTTATCTTCTGGTTCGAGTCCGCTGAAGAGGTGGCCGGAGGTTTCTCCGTCGGAATTTGGTTATTGTGGTGGCGCGCCGGACCGGCGAATAACCGCACCGCCGACGCAGCAACAGAGGAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACTTTTTATCGACGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGTAAACAGGTTTATTTGGGTGGCTTCGATACTGCACATGCTGCTGCTAGAGCATATGATCGAGCGGCGATCAAATTTCGCGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCACATTCTTCGTCGCCATAGTACTGGATTTTCAAGGGGAAGCTCGAAGTACAGAGGCGTTACTCTGCATAAATGTGGGCGGTGGGAAGCACGTATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGTAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGAATGACATAGGAGAGAACAACCAAATTATTGATCTGAACTTAGGAATTGCTCCTCCAAATCTTTCTGATGCCAGAAATGAGAGCATTGGCATGTTTGGTAATGGTATTCATCACAGCTCACAGGAGGTGCTTGTTGACAGAAGAGCTATGCCTGAGAACTCGGTTTCAACAGCAATTAGATCATCTCAGCCATATAGCTCTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCGTCTCCAGGGAGAGAGCAACAGAGATGAGGATGGGGGTTGGGTCCTGGGAGTGGCAAATCCATGGCCACCCAAGTGGAACAACCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCTTCTTCTTCATCAACTGCCGTTTCATCAGCATCACAAGCTGTTGGTGAAATCCATTTTCCAGCAATCTTCTACTGTAGGAGTTGA 1431 47.31 MLDLNLEVVSSESASDSVEMVTDRFLQFPANRMESAGSFNSSSIVNGDLSASTTGDEDSSSNADEAFPFAFGKDYADQESLTAKSLCVFDDHRDQTMVLFPLTGGLSSGSSPLKRWPEVSPSEFGYCGGAPDRRITAPPTQQQRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASENDIGENNQIIDLNLGIAPPNLSDARNESIGMFGNGIHHSSQEVLVDRRAMPENSVSTAIRSSQPYSSAVPSNYHSSWNVSNSSFFPVSRERATEMRMGVGSWEWQIHGHPSGTTSVPLFSAAASSGFPSSSSSSSSSTAVSSASQAVGEIHFPAIFYCRS* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29729628 29733907 + CsaV3_3G035470.1 Csa03g03241 524146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03241 476 MobiDBLite consensus disorder prediction 127 157 - -
Csa03g03241 476 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 SUPERFAMILY DNA-binding domain 247 306 IPR016177 GO:0003677
Csa03g03241 476 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 461 - -
Csa03g03241 476 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 461 - -
Csa03g03241 476 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Csa03g03241 476 CDD AP2 155 213 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 Pfam AP2 domain 247 296 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 Gene3D AP2/ERF domain 247 306 IPR036955 GO:0003700|GO:0006355
Csa03g03241 476 Gene3D AP2/ERF domain 155 213 IPR036955 GO:0003700|GO:0006355
Csa03g03241 476 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Csa03g03241 476 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03241 Csa-Chr3:29729628 Csa06g02953 Csa-Chr6:25565842 7.02E-91 dispersed
Csa03g03241 Csa-Chr3:29729628 Csa04g01425 Csa-Chr4:14237172 9.60E-137 wgd
Csa03g03241 Csa-Chr3:29729628 Csa05g00635 Csa-Chr5:4200122 5.36E-65 wgd
Csa03g03241 Csa-Chr3:29729628 Csa06g01688 Csa-Chr6:14811535 5.28E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31323 PF00847 AP2 1.30E-09 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03241 K09284 - csv:101211242 909.057