Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03242 ATGGACGCTAAGCTTTTGCTTCTGCTTCTTCTCTTTCTTTTCGACGTCTCCTTTGCTCAGATGCCAGGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTTGAGTGGGATCCAGATACCCAAGTTCGTTTTGGAGAAGCAGTTAACATTTCTGTTGCAAATGAAACGAGGAAGCAATATATGACGTTAAGACACTTCCCTGCTGATTCCAGGAAGTACTGTTACTCACTTAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATACGGTAATTTTGACAATAACAATGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGTCAACAATTGTCATATCTGATGCCAACACTATTGAGGTTCGAGAACTCATATTTCTGGCTTCAACTCCTACTGTAAGCGTATGTTTGTCAAATGCTACTACTGGGCAACCATTCATATCCACGCTTGAGCTTCGGCAGTTTAACGGTTCTGCCTATTACACTCAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGAGCAGATTCGGAAGCTCCAGTAAGGTATCCTGATGATCCTTTTGACCGGATGTGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAGTTTCCACTAAATTACCAATAGATGTAGATAGAGATGAAAGACCACCTCAAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAACTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCAACTGATACAAGAAAATTCAGGCTTGTACTTCCTGGAATGCCTGAAATCAGCAAAGCTGTAGTCAATATTGAGGAAAATGCTCAAGGAAAATATCGACTTTATGAGCCTGGTTTCACAAACATAACCTTACCGTTTGTTTTATCTTTCCGGTTTGGTAAAACACAAGATTCTTCATTGGGACCTCTGTTAAACGCTATGGAGATTAACAAGTATCTAGAAAAAAGTGACGGTTCTCTAGATGGAGCAGTCGTTGCTAGTGTAATTTCAAAATTTCCATCATCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACAGCCAAGAATAATTAAAATTTCATTGTCCAAACAGAATTTGTCGGGGAACATACCTACAGACATTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCCGATTTTACTGGATGCATGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGTTGCCTTCCTCTTTAGCAAGTCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGCTATCTGGAACAGTGCCCTCTGGTCTTCTCAGTAAAAACCTAGTCGTTGACTACTCTGGAAACATTAATCTTCACGAAGGGGGAAAAAAGAACCACGTTTATATCATTGTGGGTTCAGTAATTGGTGCTGTTGTTCTGCTGTTAGCTACTGTGGTATCTTGCTACTTCTTACATAAAGGAAGAAGAAGATATCATGAACAAGGAGATCTACCTGAAGAATCCTTGGCTGTACAAAGATTTGTCTCGTCAAAGGGTGATGCCTCCAAGGAAACCGCACATTGCTTCAGTGTAAATGAAATTGTCCAAGCAACGAAAGATTTTGAAAGAAAAATTGGCTCTGGAGGTTTCGGTGTTGTATACTACGGGAAGTTAAATGATGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTCCAGGGAAGGCGAGAATTTGCAAATGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATCTTGTACAATTTCTGGGATATTGCCAAGAACAAGACAGAAGTATGCTTATCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGTGAAAAAACTATCAGTTGGATAAAGCGCCTCGAGATTGCTGAAGATGCTGCAAGAGGGGTTGAGTACCTTCATACAGGCTGTATTCCAGCAATTATTCACAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAAAGCCAAGGTTTCAGATTTTGGTCTTTCGAAGCTTGCAGTAGATGGGGTCTCCCATGTGTCCAGCATCGTTCGGGGGACTGTTGGATATTTGGATCCGGAGTATTACATCTCCCAGCAGTTGACAGACAAGAGTGATGTATATAGCTTTGGCGTTATTCTTCTCGAGTTGATATCCGGTCAAGAAGCTATATCTAATGTAAACTTTGGTGCTAATTGCCGCAACATTGTCCAATGGGCGAAATTACACATCGAGAGCGGTGACATTCAAGGGATCATCGATCCATCGCTCCGCAATGAATATGACATTCAATCGATGTGGAAAATAGCAGAGAAAGCACTAATGTGTGTACAGGCAAATGGGCACCTGAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAGGATTCAATTCTAATTGAAAGGGAATCAACTGCAACTAAAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCTTTGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTGTCGTTTGACGAATCCATTGCTCGGCCTACCGCAAGGTAG 2766 41.03 MDAKLLLLLLLFLFDVSFAQMPGFVSLDCGGQESFTDDIGLEWDPDTQVRFGEAVNISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSAYYTQFEDQFYLSVSARINFGADSEAPVRYPDDPFDRMWESDSVRKANYLVDVAAGTEKVSTKLPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPEISKAVVNIEENAQGKYRLYEPGFTNITLPFVLSFRFGKTQDSSLGPLLNAMEINKYLEKSDGSLDGAVVASVISKFPSSDWDEGGDPCMPVPWSWLQCNSDPQPRIIKISLSKQNLSGNIPTDIAKLSGLVELWLDGNSFVGPIPDFTGCMDLKILHLENNQLTGELPSSLASLPNLRELYVQNNMLSGTVPSGLLSKNLVVDYSGNINLHEGGKKNHVYIIVGSVIGAVVLLLATVVSCYFLHKGRRRYHEQGDLPEESLAVQRFVSSKGDASKETAHCFSVNEIVQATKDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANEVTLLSRIHHRNLVQFLGYCQEQDRSMLIYEFMHNGTLKEHLYGPLTREKTISWIKRLEIAEDAARGVEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGANCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQANGHLRPSISEVLKEIQDSILIERESTATKEGNSDDMSRNSVHSLNMGSLDLCGNENYVSFDESIARPTAR* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29742399 29749538 + CsaV3_3G035480.1 Csa03g03242 524147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03242 921 Pfam Malectin-like domain 27 357 IPR024788 -
Csa03g03242 921 Pfam Protein kinase domain 597 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03242 921 Gene3D Ribonuclease Inhibitor 373 519 IPR032675 -
Csa03g03242 921 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Csa03g03242 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672|GO:0006468
Csa03g03242 921 Gene3D Phosphorylase Kinase; domain 1 568 669 - -
Csa03g03242 921 CDD STKc_IRAK 600 867 - -
Csa03g03242 921 SUPERFAMILY Protein kinase-like (PK-like) 581 864 IPR011009 -
Csa03g03242 921 SMART serkin_6 594 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03242 921 Gene3D Transferase(Phosphotransferase) domain 1 670 893 - -
Csa03g03242 921 PANTHER OS07G0107800 PROTEIN-RELATED 10 907 - -
Csa03g03242 921 ProSiteProfiles Protein kinase domain profile. 594 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03242 921 PANTHER TYROSINE KINASE DOMAIN PROTEIN 10 907 - -
Csa03g03242 921 SUPERFAMILY L domain-like 393 499 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03242 Csa-Chr3:29742399 Csa05g02244 Csa-Chr5:25121146 0 dispersed
Csa07g01506 Csa-Chr7:15434127 Csa03g03242 Csa-Chr3:29742399 2.47E-129 dispersed
Csa03g03242 Csa-Chr3:29742399 Csa03g04110 Csa-Chr3:36012252 8.86E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78051 PF12819 Malectin_like 2.80E-76 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03242 - - csv:101212456 1838.93