Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03243 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGTGAGCAGAGTCCGAGGTCTAATGTTCGCGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAGGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACTAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGTGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATTGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACGGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGGGTCAGCTAAGAAAGAAGCTCATCCAACCCCTATTCCTCAGATGGCTCATCAAGGGTCGTTTTCCCAAGGAGTTAATTATGCAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGTACTGACTGA 522 45.59 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQSQAQHLMVPMQGTD* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29752680 29756490 + CsaV3_3G035490.1 Csa03g03243 524148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03243 173 Gene3D Histone, subunit A 17 162 IPR009072 GO:0046982
Csa03g03243 173 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Csa03g03243 173 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Csa03g03243 173 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Csa03g03243 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa03g03243 173 MobiDBLite consensus disorder prediction 143 173 - -
Csa03g03243 173 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Csa03g03243 173 MobiDBLite consensus disorder prediction 117 173 - -
Csa03g03243 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Csa03g03243 173 MobiDBLite consensus disorder prediction 1 28 - -
Csa03g03243 173 SUPERFAMILY Histone-fold 27 135 IPR009072 GO:0046982
Csa03g03243 173 MobiDBLite consensus disorder prediction 117 132 - -
Csa03g03243 173 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00408 Csa-Chr3:3477057 Csa03g03243 Csa-Chr3:29752680 1.28E-57 dispersed
Csa03g00428 Csa-Chr3:3632231 Csa03g03243 Csa-Chr3:29752680 5.33E-46 dispersed
Csa03g00429 Csa-Chr3:3643113 Csa03g03243 Csa-Chr3:29752680 4.40E-20 dispersed
Csa03g03243 Csa-Chr3:29752680 Csa06g00967 Csa-Chr6:7816316 2.66E-62 dispersed
Csa01g02776 Csa-Chr1:24509832 Csa03g03243 Csa-Chr3:29752680 3.09E-30 transposed
Csa03g03243 Csa-Chr3:29752680 Csa05g00631 Csa-Chr5:4179690 1.96E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31324 PF00808 CBFD_NFYB_HMF 7.90E-28 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03243 K08065 - csv:101212699 330.487