Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03246 ATGGAGCAAGCGTTTTCAGACTTCAACATTGCTGGAGATATCTTGGATTTGTACTTCCCCCGAACTGTCTTCACTGTCGAAAATGGATGGCTCAACCTCATTTCTCAGCTCATTTTCTTTTTTTCTTCTCCGGCAGGTCGACATCTCTCTTCACAGGCTGTCGATGATGGTCGTGGTATATTTATTTTGTCAATCGACTTTCAACAATTCCGGAAGATTTGTGATCAACATGAGTTTTACATAATGTTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCAATTCATCAGGTAATGAGGACCAAGTGGGTGCATAATTTAGAATATGTCACAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAATTTGAAGGCGGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAGGTTAGCACTGTGAAGCCCTTGGTGGTGCAAATGAGCTTTGGTTGTGCAAAGTGCAAAAGCCATATCACACTAAGCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGATCGACAGCTGAAGCAATCGACTTTCAAAAGATACGATTACAAGAACTCACTAAACCTGATGATCACGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTAGTGGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTAATTAATAATTACATGGATATTGGAGGAGGAAAATCAAAGAGCAAAAACCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGTCACAGTCTACACCTGAGGAGTTGCAAGATTCTAACTCTAATGCAAGAGCCACTGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTAGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCGGATGTTTTTCGTCAAATACTGCAATCCATTTGTCCTTCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTGTTTGGTGGTGTGCGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTAGTTGGTGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCTGCTGCAGCTATTTCTCCACGTGGTATATATGTTTGTGGTAATGCAACAACCAAGGCCGGCCTAACTGTAGCTGTTGTGAGGGATCCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGCTGTATAGATGAGTTCGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCCATGGAACAACAATGTGTATCAATTGCAAAAGCTGGACTGGTAGCAAGTCTGTCAGCTCGCACTTCTATTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCAAGATTTGATTTAGTTTTTATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATGTGGGGAACGCGCCTCTGCAGCAAAAAGACTACGTAAAGATATATCTCCTTTGGCTTTAAAGAATGTAGCAATGGAGAATGATGGAAAAGTAGATGCTGGTTCGAGACGCGAGTCTTTAGTTTCAAGACTGAGATTGGACAAAGCAAAAGATGGAGATTTTGTACCATTACCTGGTCAACTTCTTCGCAAATATATAGCCTATTCAAGAACTTTTGTTTTCCCTAGGATGTCAAAGTCCGCAGCAGACATCTTGCAGAGATTTTACTTACGACTGCGTGACCAGAATACATCAGCGGATGGTACACCAATTACAGCAAGGCAACTAGAAAGTTTGGTGAGGCTGGCAGAAGCCCGAGCACGGGTAGACCTCAGGGAAGAAATTACAGTAGAAGATGCAATGGATGTGGTTGAAATAATGAAGGAATCCCTATACGATAAGTATGTAGATGAACATGGAGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAACGATTTCTGAGTGCACTCAACAAGCAATCTGAGTTGCAGCAGAAAGACTGTTTTTCTATCTCGGAAATATATAGCTTGGCAGATAAGATTGGTCTACGAGTACCTGACATCGATACCTTCATAGAAAATCTCAATTGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGGTGCTATCCTCATCGTACACCAGTCAATCAACAAGGTCAAGAGGGTAA 2382 41.65 MEQAFSDFNIAGDILDLYFPRTVFTVENGWLNLISQLIFFFSSPAGRHLSSQAVDDGRGIFILSIDFQQFRKICDQHEFYIMLEENPKVALKCMSAAIHQVMRTKWVHNLEYVTKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFGCAKCKSHITLSFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKPDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQSTPEELQDSNSNARATELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAISPRGIYVCGNATTKAGLTVAVVRDPMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSILAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGCGERASAAKRLRKDISPLALKNVAMENDGKVDAGSRRESLVSRLRLDKAKDGDFVPLPGQLLRKYIAYSRTFVFPRMSKSAADILQRFYLRLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVEDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADKIGLRVPDIDTFIENLNCVGYLLKKGPKTYQVLSSSYTSQSTRSRG* 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29769169 29779042 - CsaV3_3G035520.1 Csa03g03246 524151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03246 793 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 Coils Coil 451 471 - -
Csa03g03246 793 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 7 788 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 SMART mcm 126 694 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 Pfam MCM OB domain 130 259 IPR033762 -
Csa03g03246 793 Gene3D - 314 702 IPR027417 -
Csa03g03246 793 PANTHER DNA HELICASE MCM8 7 788 - -
Csa03g03246 793 SMART AAA_5 380 532 IPR003593 -
Csa03g03246 793 CDD MCM8 340 692 - -
Csa03g03246 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Csa03g03246 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 Gene3D - 130 260 IPR012340 -
Csa03g03246 793 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Csa03g03246 793 Gene3D - 157 207 - -
Csa03g03246 793 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa03g03246 793 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03246 Csa-Chr3:29769169 Csa07g00021 Csa-Chr7:360064 6.06E-94 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03246 K10737 - csv:101211972 1524.99