Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03262 ATGATGTTGAATTTCTCTTCAATATTCTCATCAATTACCTTCACATTACTTCTATTTTCCATTTCCAATACTGTCATTGTCGATTTCACTGCCACCGTCGCCGCCGCGGCCGAATTTGACTTCGGCACTGTTGAACTCAGTAGTTTAAAGCTACTCGGCGATGCCCACTTGAACAACGGGAGCGTGAGGCTCACTCGGGACCTCGCGGTCCCAAATTCCGGCTCCGGCAGAGTCCTTTACGCTAAACCCATCAGATTCCGGCAGCCGGGGATTGATTACCTCGCTAGTTTCTCCACATTTTTCTCTTTCTCTATTACTAATCTCAACCCGTCGTCGATCGGCGGTGGTTTGGCGTTTGTTATATCCCCGGACGCTGAAACGCTCGGCGGCGCTGGTGGGTTGTTGGGGTTGGCTGACGAGAGGGGATTGGGATTCGTGGCGGTGGAATTTGATACGTTAATGGACGTGGAATTTAAGGACATTAATGGAAACCATGTGGGATTGGATCTGAACGAAATGGTTTCGTTAGAGGTTGAAGATCTTCAGGGAATTGGAGTCGATCTTAAAAGCGGCGATACGGTGAATGCGTGGATTAAATACGATGGGTCGGCACGGATCTTCGAAGTATTTGTTTCTTATTCGAATTTGAAACCGACAGAACCTCTAATGTCGTTCAATCTCGACCTTGATCCGTATTTGAACGATTTTATGTACGTTGGATTTTCCGGTTCGACACAGGGGAGTACGGAAGTTCACAGTGTGGACTGGTGGAGCTTTGCGTCGTCATTTGACTCGGATTCAACACCTGGGTCGGTTCCGCCGCCGCCAACGACGACGCTGATGAACCCAACGGCGAATGTTGTTCGTTCACCGCCACCGTCGCAACCGCCATCCGGTTCAGATTCCGTCACGCAAAAGAACTTCAAGTCCACGTCCTGCCACAATGGGCTCTGCAAGCAAGGCGCTGGAGCGGTGGTCGGAGTTGTGACGGCGGGGGCATTTGTTTTAGCATTATTCGCCGGCGCGTTAATTTGGGTATATTCCAAAAAGATCAAGCGGGTTAAAAAATCGGATTCCCTCGCTTCAGAAATCATCAAAATGCCTAAGGAATTCACTTACAAGGAGCTCAAAATCGCCACCAAATGCTTCAATTCGAACAGAATCATCGGCCATGGAGCTTTTGGGACTGTCTATAAAGGGATTCTGCCGGAGACCGGCGACATTGTGGCGGTGAAACGGTGTAGCCATAGTACACAAGGGAAAAATGAATTCCTCTCTGAACTTTCAATCATCGGAACTCTCCGCCATCGGAATTTAGTCCGTCTTCAAGGATGGTGCCACGAGAAAGGCGAAATTTTACTCGTTTACGATTTAATGCCAAATGGGAGTTTAGATAAAGCTCTATTCGAGGCTAGAACGCCGCTGCCGTGGCCTCACCGGAGAAAAATCCTTCTGGGCGTCGCTTCCGCTTTAGCCTATCTGCATCAAGAATGTGAAAATCAAGTCATTCACAGGGACGTTAAAACCAGCAACATAATGTTGGATGAAGGATTCAATGCCCGATTAGGCGATTTCGGATTAGCCCGACAAGTAGAGCACGATAAATCCCCAGACGCCACCGTCGCGGCTGGCACAATGGGTTACTTAGCACCGGAATATCTCCTCACCGGACGAGCTACGGAAAAAACCGACGTCTTTAGCTTCGGCGCCGTCGTTCTCGAAGTCGCTAGTGGCAGACGGCCAATTGAGAAAGATAGCACCGCAGTTGGCGGTGGCGGAAAATTCGGTGCCAACAGTAATTTGGTAGACTGGGTTTGGAGTTTACACAGGGAAGGACGGTTGTTGACGGCCGCTGACGGAAGACTGGGCGGCGAGTTTGAGGAATCAGAAATGAGGAAAGTTTTGTTAGTTGGGTTAGCTTGTTCTCACCCGGATCCAATGACCCGACCCACAATGAGAGGCGTAGTGCAAATGTTAATTGGCGATTCAGAGATTCCGATCGTGCCTCGGTCTAAACCGTCCACAAGCTTCAGTACCGCTCATTTGCTTCTCACTCTACAAGACAGCGTGTCCGATCTCAACGGCATGATAGCCATTTCCACTTCCTCCTCCGAGCATAGCTTCAATGGAGAGGATTTAATTTCACTGGATGATCGGACGTTTAGTTTGTTCATGTTTCGTTTATTTTTCTTTATAATTGAAAGTGACTCCAATGTTCTCCATGTTTTGTACCGGAAGAATGGGCCTAGATATCATTGGGCTTTCTCTCAAGCCCAATTTGTCAAACTTGGGCCTTATGCGAATAGAGTTAACGTTTATCCTACCTTCAAAATCAACACACAAATCTCTCTGACATTTTCATTATCGTCAACCCTTTGCCATCGATCTCATCCCTACAATTGCCGGTATTCTGGATCTTCTTGCCGGTCGATCTACCCGGCTCTGAGTCATAGCATGGCTTCAGCCAATGGCAAGGGAAATGTGATCAATGATATTGAAGCAAAAGGATTCAATCCAGCACTAATAGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTAGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCCAAAAAGAAGATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA 2691 47.79 MMLNFSSIFSSITFTLLLFSISNTVIVDFTATVAAAAEFDFGTVELSSLKLLGDAHLNNGSVRLTRDLAVPNSGSGRVLYAKPIRFRQPGIDYLASFSTFFSFSITNLNPSSIGGGLAFVISPDAETLGGAGGLLGLADERGLGFVAVEFDTLMDVEFKDINGNHVGLDLNEMVSLEVEDLQGIGVDLKSGDTVNAWIKYDGSARIFEVFVSYSNLKPTEPLMSFNLDLDPYLNDFMYVGFSGSTQGSTEVHSVDWWSFASSFDSDSTPGSVPPPPTTTLMNPTANVVRSPPPSQPPSGSDSVTQKNFKSTSCHNGLCKQGAGAVVGVVTAGAFVLALFAGALIWVYSKKIKRVKKSDSLASEIIKMPKEFTYKELKIATKCFNSNRIIGHGAFGTVYKGILPETGDIVAVKRCSHSTQGKNEFLSELSIIGTLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKILLGVASALAYLHQECENQVIHRDVKTSNIMLDEGFNARLGDFGLARQVEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSFGAVVLEVASGRRPIEKDSTAVGGGGKFGANSNLVDWVWSLHREGRLLTAADGRLGGEFEESEMRKVLLVGLACSHPDPMTRPTMRGVVQMLIGDSEIPIVPRSKPSTSFSTAHLLLTLQDSVSDLNGMIAISTSSSEHSFNGEDLISLDDRTFSLFMFRLFFFIIESDSNVLHVLYRKNGPRYHWAFSQAQFVKLGPYANRVNVYPTFKINTQISLTFSLSSTLCHRSHPYNCRYSGSSCRSIYPALSHSMASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE* 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29836435 29842482 - CsaV3_3G035680.1 Csa03g03262 524167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03262 896 Pfam DNA binding protein S1FA 832 896 IPR006779 GO:0003677|GO:0005634|GO:0006355
Csa03g03262 896 ProSiteProfiles Protein kinase domain profile. 383 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03262 896 ProSitePatterns Legume lectins beta-chain signature. 146 152 IPR019825 -
Csa03g03262 896 Pfam Protein kinase domain 384 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03262 896 MobiDBLite consensus disorder prediction 264 307 - -
Csa03g03262 896 CDD lectin_legume_LecRK_Arcelin_ConA 38 257 IPR001220 GO:0030246
Csa03g03262 896 Gene3D Transferase(Phosphotransferase) domain 1 459 665 - -
Csa03g03262 896 CDD STKc_IRAK 389 659 - -
Csa03g03262 896 Pfam Legume lectin domain 39 265 IPR001220 GO:0030246
Csa03g03262 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Csa03g03262 896 Gene3D Phosphorylase Kinase; domain 1 345 458 - -
Csa03g03262 896 PANTHER - 31 708 - -
Csa03g03262 896 Gene3D - 35 271 - -
Csa03g03262 896 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 31 708 - -
Csa03g03262 896 MobiDBLite consensus disorder prediction 871 896 - -
Csa03g03262 896 SUPERFAMILY Protein kinase-like (PK-like) 365 688 IPR011009 -
Csa03g03262 896 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 275 IPR013320 -
Csa03g03262 896 MobiDBLite consensus disorder prediction 872 886 - -
Csa03g03262 896 ProSitePatterns Protein kinases ATP-binding region signature. 389 412 IPR017441 GO:0005524
Csa03g03262 896 SMART serkin_6 383 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03262 Csa-Chr3:29836435 Csa03g03162 Csa-Chr3:29326367 6.93E-138 dispersed
Csa06g01898 Csa-Chr6:17105850 Csa03g03262 Csa-Chr3:29836435 1.66E-76 dispersed
Csa02g00935 Csa-Chr2:8817850 Csa03g03262 Csa-Chr3:29836435 3.23E-51 transposed
Csa03g00423 Csa-Chr3:3588410 Csa03g03262 Csa-Chr3:29836435 0 transposed
Csa03g03262 Csa-Chr3:29836435 Csa06g02554 Csa-Chr6:22638132 6.10E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31325 PF00069 Pkinase 6.70E-50 CL0016 Csa TF
78052 PF00069 Pkinase 6.70E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03262 - - csv:101215187 1328.15