Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03265 ATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATCTGCCAGAAGTACGACAAATATGACATAGAAAAGCAGAGAGATCTCAATGTCTCCGGCGACGATGCCTTCGCTCGTCTCTACGCCACCGTTGAAGCTGACATTGAAGCCGCTCTACAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCCGTGGTGGCGTTGAATGCGGAGATTCGTCGTACGAAGGCTCGATTACTGGAGGAAGTTCCCAAGTTGCAAAGGTTGGCTGTAAAGAGGGTTAAAGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTACCGGATAGAATTCAAGCTATACCAGATGGAACTGTGACTACCACGAAGAATAATGGGGGCTGGACATCCTCAGCTTCACGGACTGAAATCAAATTTGACTCAGATGGGCGGTTTGATGATGAGTACTTCCAACACACCGAGCAGTCCAGTCAGTTCAGGCAGGAGTATGAAATGAGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAATATGGCACATGATATGAATGAGGAAATAGACAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTTAGATTAAAGGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTTTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA 798 44.86 MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTVTTTKNNGGWTSSASRTEIKFDSDGRFDDEYFQHTEQSSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29857638 29862134 + CsaV3_3G035710.1 Csa03g03265 524170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03265 265 Gene3D - 170 231 - -
Csa03g03265 265 Pfam SNARE domain 207 256 IPR000727 -
Csa03g03265 265 CDD SNARE_Qc 175 230 - -
Csa03g03265 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Csa03g03265 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Csa03g03265 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa03g03265 265 SMART tSNARE_6 165 232 IPR000727 -
Csa03g03265 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Csa03g03265 265 PANTHER SYNTAXIN-73 1 261 - -
Csa03g03265 265 Coils Coil 40 60 - -
Csa03g03265 265 Coils Coil 219 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02736 Csa-Chr3:26193837 Csa03g03265 Csa-Chr3:29857638 0 dispersed
Csa03g03265 Csa-Chr3:29857638 Csa06g01683 Csa-Chr6:14745227 8.53E-133 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03265 K08506 - csv:101215905 504.597