Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03266 ATGTCAACTAATCCTTTTTCTCTTCTCTCTTCTACTACCACTTCCTTCCCTCACCCACAAGATGCCAACCCTAACCCTAACCCTAAACCGAAACCCTCCGCTGCTGCTGCCAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATCGCTTTGTCGCCGAAGTCGCTCATGGCGACGAATAGATTCATATGTGAAATTTGTAACAAGGGGTTTCAGAGAGACCAGAATCTGCAGCTTCATCGACGAGGGCATAACTTACCGTGGAAGTTGCGACAACGGACGAACAAGGAACCGATTAAGAAGAAGGTGTATATTTGTCCAGAAAAGACATGTGTCCACCATGATCCGTCGCGAGCTCTCGGAGACCTCACCGGAATAAAGAAGCATTTCAGCCGGAAGCACGGCGAGAAGAAGTGGAAATGTGACAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGCGATTGTGGAACTCTTTTTTCCAGGAAAGATAGCTTCATAACTCATAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCTACAAATATTCTCAATAATCTAAGAAATGATTCAAATAATATCAATCTTCTTCATCAACAAGCTGATCATCATCAATCTTTGATTGATCATCATCAATCTCTTGGAGATATTTCTGGACTTTCCCAATTCACTAATCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAAAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCTGCTGAAAATGCAATCAACAGCAACAACAGTATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTCGGATCGATAACCGAAAACGGGCTTTCGATGTTGCCAGTGATGGAGAAAGAAGATGTTGAGAATAAGGGAAGTAATAATAATTTTTCTAAAGCTACATCATCGTCGGCAGCAGCGCTGTTGTCGGGTCAGTCTTCTCAGTCTGTTGTTTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCGGCAATAATAATAATACCCCGCTCTTTGGTTCGGGTGCTTTCGGAGTCATGAGTTCTTCGTCGTCGTTGTCCTCATCGTCGTCTTCCAATGCAGTAAGCAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGTTGACTCGGTTCAGATGATCGGTAGCAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATTCCACCAAACGGTAACAACGCTATGAGAAGTAGTGGACAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCACCAGAGCTAGCAAAATTCACCACCATAAACTCAACAATGGGACTAAGCCAATTTGCCGCCAACCACTAA 1500 43.6 MSTNPFSLLSSTTTSFPHPQDANPNPNPKPKPSAAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNNINLLHQQADHHQSLIDHHQSLGDISGLSQFTNHSDHFLRDFEDHQQKNRSPLSLWLNQASAENAINSNNSISNFFGASSSSSNLFGSITENGLSMLPVMEKEDVENKGSNNNFSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSGNNNNTPLFGSGAFGVMSSSSSLSSSSSSNAVSSLNSLNKSRSLTMVDSVQMIGSNSDLSSNCLSQLLIPPNGNNAMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFTTINSTMGLSQFAANH* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29869314 29872557 + CsaV3_3G035720.1 Csa03g03266 524171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03266 499 Gene3D Classic Zinc Finger 46 118 - -
Csa03g03266 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 416 - -
Csa03g03266 499 MobiDBLite consensus disorder prediction 1 20 - -
Csa03g03266 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Csa03g03266 499 Gene3D Classic Zinc Finger 119 201 - -
Csa03g03266 499 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 1 416 - -
Csa03g03266 499 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Csa03g03266 499 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Csa03g03266 499 MobiDBLite consensus disorder prediction 1 50 - -
Csa03g03266 499 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Csa03g03266 499 SMART c2h2final6 67 89 IPR013087 -
Csa03g03266 499 SMART c2h2final6 144 164 IPR013087 -
Csa03g03266 499 SMART c2h2final6 109 139 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03266 Csa-Chr3:29869314 Csa03g04077 Csa-Chr3:35706524 7.73E-114 dispersed
Csa05g00943 Csa-Chr5:7821071 Csa03g03266 Csa-Chr3:29869314 1.06E-111 transposed
Csa07g01808 Csa-Chr7:18331491 Csa03g03266 Csa-Chr3:29869314 8.11E-85 transposed
Csa03g03266 Csa-Chr3:29869314 Csa04g01407 Csa-Chr4:14099785 6.23E-19 wgd
Csa03g03266 Csa-Chr3:29869314 Csa06g02557 Csa-Chr6:22648905 9.17E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31326 PF12171 zf-C2H2_jaz 7.30E-05 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03266 K25870 - csv:101213422 852.432