Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g03269 | ATGGGTAACATTGGCAGCTCCGGTTCCAATGCCCGTAGAAGACACGGTACTCGCCGGAATCACCCTACTCCCCCACCTCCTCCACCACCCCAACCCGAAATTACAAGTAATCGATACGTTTTCGCTGCCGCTACGCCTTACCCAACTCAATACCCCAACCATCCCAATCATCCCCCGCCGTATTACCAGTATCCTGGCTACTTTCCACCGCCACCTGGTCCACCCCCATCCATGCCGATGCCTCTACCGGCGCCTTACGATCATCACCATCGTGGAGGTCATCCCCAGATGGATCCTGCTCATTGGGTCGGTGGGAGATACCCTTATGGCCCTCCTATGCCGCCTCAAACGCCCTATGTAGAGCATCAGAAGGCGGTTACTATACGGAATGATGTTAATCTCAAGAAGGAAACTCTTAAGGTTGAACCTGATGAAGAAAATCCGGGGCAATTCCTTGTATCGTTCACGTTCGATGCCACCGTTGCTGGGAGTATCACCATCTTCTTCTTTGCGAAAGAAGGTGAAGATTGTAACTTGACCCCTGTAAAAGAAGACATTTTTCAACCAATAACCGTTCATTTCGAGCAAGGGCTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATAGATTTCTCAAAGTTTGAAGAGTCTGAGTTTTTGAAAGTGAATGACACCGATGTCTATCCACTAGTCGTAAAAGCTGAAGCTTCCACAGACACCCAAACTGGCCCAGATGGTACCCCGGTACCTGATCCCATGAATTCTCAGATAACACAAGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTAAGAGTGTTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAACTACAGGAGATATATGGCATTGGCAATTCAGTTGAGGGAGATGTTGATGGAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAGCCACGGGACACGACTGTCCTTCCCTGCCGACACATGTGTATGTGTAGTGGTTGTGCTAAGGTACTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCTGTGGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGAAAGTTAA | 1107 | 48.24 | MGNIGSSGSNARRRHGTRRNHPTPPPPPPPQPEITSNRYVFAAATPYPTQYPNHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRGGHPQMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLKVEPDEENPGQFLVSFTFDATVAGSITIFFFAKEGEDCNLTPVKEDIFQPITVHFEQGLGQKFRQPSGTGIDFSKFEESEFLKVNDTDVYPLVVKAEASTDTQTGPDGTPVPDPMNSQITQAVFEKDKGEYQVRVLKQILWVNGMRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEES* | 369 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 29883079 | 29887257 | - | CsaV3_3G035750.1 | Csa03g03269 | 524174 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g03269 | 368 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
| Csa03g03269 | 368 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 1 | 367 | - | - | |
| Csa03g03269 | 368 | SMART | ring_2 | 311 | 349 | IPR001841 | - | |
| Csa03g03269 | 368 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 296 | 360 | IPR013083 | - | |
| Csa03g03269 | 368 | PANTHER | MAHOGUNIN | 1 | 367 | IPR045194 | GO:0061630 | |
| Csa03g03269 | 368 | Pfam | Zinc finger, C3HC4 type (RING finger) | 309 | 355 | - | - | |
| Csa03g03269 | 368 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 310 | 350 | IPR045195 | - | |
| Csa03g03269 | 368 | ProSiteProfiles | Zinc finger RING-type profile. | 311 | 350 | IPR001841 | - | |
| Csa03g03269 | 368 | SUPERFAMILY | RING/U-box | 310 | 356 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g01372 | Csa-Chr3:10311668 | Csa03g03269 | Csa-Chr3:29883079 | 1.29E-87 | dispersed | |
| Csa03g01392 | Csa-Chr3:10432229 | Csa03g03269 | Csa-Chr3:29883079 | 1.67E-06 | dispersed | |
| Csa03g03269 | Csa-Chr3:29883079 | Csa06g03928 | Csa-Chr6:31013453 | 1.72E-07 | dispersed | |
| Csa03g03269 | Csa-Chr3:29883079 | Csa02g01301 | Csa-Chr2:12650213 | 2.47E-07 | transposed | |
| Csa03g03269 | Csa-Chr3:29883079 | Csa07g00028 | Csa-Chr7:401392 | 2.69E-07 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g03269 | - | - | csv:101216150 | 638.647 |