Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03271 ATGGCGACCAGCGACATCGAAATCGGAGGTCGGGGGGCGGCGTCGAGGAAAGACTATTTTGATCCGCTGCCGGCGCCGATGATCGACATGGAGGAGCTCGGGAAATGGTCGTTTTACAGAGCTATCATCGCTGAGTTTGTGGCGACTCTGTTGTTTCTGTACGTCGTCGTTTTGACGGTGATCGGAAACAATAGCCAGATGGACCCGATCAACGGCGGGAATGTATGCGCCGGAGTTGGTCCCGTCGGAATCTCGTGGGTCTTCGGGGGTATGATCTTCGTCCTCGTCTACTGCACCGCCGGTATCTCTGGAGGGCACATAAATCCAGCAGTGACATTCGGAATGTTTTTAACAAGAAAGATATCGTTGGTCCGAGCCTTGCTCTACATCATAGCTCAGTGCATAGGGGCCCTGTGCGGGTGCGCCTTAGTCAAGACATTGCAGCGAGATCATTACAACCACTATGGCGGTGGCGCTAACCAGCTCGTTGATGGTTATAGCCGAGGCACTGGCCTTGCTGTTGAGATTATGGGCACCTTTATTCTTCTGTATACTGTCTTCTCCGCCACTGATCCCAAACGCAATGCTAGAGATTCCCATGTTCCTGTCTTGGCTCCACTCCCCATTGGCTTTGCTGTCTTCATTGTTCACCTCGCCACCATTCCCGTCACCGGCACTGGCATTAACCCTGCTCGAAGCTTCGGTCCTGCCGTCATCATCAACAATCATAAAGTTTGGAAAGATCATTGGATTTTTTGGGTTGGGCCACTAATTGGATCAACAATTGCTGCAATGTATTATCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTTAGAAGCTCACCGCCAACTCGCTTCTAA 873 51.32 MATSDIEIGGRGAASRKDYFDPLPAPMIDMEELGKWSFYRAIIAEFVATLLFLYVVVLTVIGNNSQMDPINGGNVCAGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFLTRKISLVRALLYIIAQCIGALCGCALVKTLQRDHYNHYGGGANQLVDGYSRGTGLAVEIMGTFILLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPVTGTGINPARSFGPAVIINNHKVWKDHWIFWVGPLIGSTIAAMYYQYVLRASAVKAIGSFRSSPPTRF* 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29893968 29896121 - CsaV3_3G035770.1 Csa03g03271 524176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03271 290 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Csa03g03271 290 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03271 290 Pfam Major intrinsic protein 33 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03271 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Csa03g03271 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Csa03g03271 290 PANTHER AQUAPORIN PIP2-4-RELATED 12 285 - -
Csa03g03271 290 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03271 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 285 IPR034294 -
Csa03g03271 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03271 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03271 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03271 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03271 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03271 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03271 Csa-Chr3:29893968 Csa06g02568 Csa-Chr6:22701550 2.67E-159 dispersed
Csa02g01348 Csa-Chr2:12986776 Csa03g03271 Csa-Chr3:29893968 1.31E-20 transposed
Csa04g01138 Csa-Chr4:9698165 Csa03g03271 Csa-Chr3:29893968 2.91E-13 transposed
Csa03g03271 Csa-Chr3:29893968 Csa05g02810 Csa-Chr5:28635798 6.46E-154 wgd
Csa03g03271 Csa-Chr3:29893968 Csa06g02564 Csa-Chr6:22678455 3.77E-140 wgd
Csa03g03271 Csa-Chr3:29893968 Csa06g01193 Csa-Chr6:10078532 1.72E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03271 K09872 - csv:101214142 582.022