Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03293 ATGTCACAATATTCTCAAGAGATAAAGACGACTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCCTCTCTTCTCATCCTCTTCCTCCTCCTGACCCATTTATAACCAACAATCCAACACCCGAGAACACTGACCCTGAACACCTCAGACCCACACAAGAGCCTCAAGACGGAGTTGGCAGGGCTAAATACAGAGAAATGGAGTCTACCACTGATTCCAAGAAGGAAAACGGCGGCGGCGGCGGCGGCAGCACTAGTGGGGAGAAGCCTGAGGCTGTTACCGCCATTGGGTTTGGGGAGCTTTTCAGATTCGCTGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCCGTTGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTCTTTCTTCGATTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTATGCCAATGATGTTGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCTTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGAGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGATATTCAGTATTTTGATACAGAGGTGCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAATTTCATCCACTATATGGCAACTTTTGTGTCCGGATTCGTTGTGGGTTTCACTGCCGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCCGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCCGGGAATATTGTCGAACAGACAATAGTTCAAATTCGAGTTGTTTTTGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAGAAGATAGGTTTCAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCTACTTACTTTGTTGTTTTCTGCTGTTACGCACTTCTGCTCTGGTACGGAGGTTATCTTGTCAGACACCACGCCACCAATGGTGGACTGGCCATAGCCACTATGTTTGCAGTAATGATTGGTGGACTGGCACTGGGGCAATCTGCCCCCAGCATGAGCTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATTGACCATAAGCCCACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTCGAGCTGAAAAATGTTGATTTCGCATACCCATCAAGGCCAGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCTGCTGGAAAAACAATAGCTCTGGTCGGAAGCAGCGGCTCCGGCAAGAGCACGGTTGTTTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGACGGACGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGACAGCAGATAGGATTGGTGAGCCAAGAGCCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTATTAGGCAGACCTGAAGCAGACCAACTTGAGGTGGAGGAAGCTGCTCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGAGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATCGCAATAGCAAGGGCAATGCTTAAAAACCCCGCGATTCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATAGGGCGGACCACCCTTGTCATTGCCCATCGACTCTCTACCATTCGGAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTATTTGCTAAAGGAGAGAATGGTGTATATGCCAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTGCTCTCAGTAATGCCAGAAAAAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCCCCAATCATTGCACGGAATTCTTCCTATGGTCGATCACCATATTCACGTCGATTATCTGACTTCTCCACATCTGATTTTAGTCTTTCTCTCGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTGGCCTTTAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCCGAATGGCTTTGTGCACTACTTGGTTCTATAGGCTCTGTTGTTTGTGGGTTTTTAAGCGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAGTACTGCTACTTGTTAATCGGACTTTCGTCGGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTAGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAATACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCTTGGATGCTAACAACGTCAGATCAGCCATTGGAGACAGGATTTCAGTGATTGTACAGAACACATCACTCATGCTAGTTGCTTGCACCGCTGGGTTTGTTTTGCAGTGGCGCCTGTCTCTTGTCCTTGTAGCTGTCTTCCCCGTGGTTGTTGCTGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTCTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAGCTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCGGCATTCAACTCGGAAGAGAAGATTGTCAGACTTTTTTCAACCAACCTCGAAATCCCACTACGTCGCTGCTTTTGGAAGGGACAAATTGCTGGTAGTGGGTTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTGAAGCATGGGCTCTCTGATTTTTCAAAGGCAATTCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCCGAAACACTCACTCTAGCTCCTGACTTTATCAAGGGTGGTCGAGCCATGCGTTCCGTATTTGCACTTCTTGACCGTAAAACTGAAATTGAACCTGATGATCCAAACGTCACCCAAGTCCCAGATAAACTTCGTGGAGAAGTTGAATTAAAACATGTTGACTTTTCCTACCCAACTCGTCCTGACATCCTTGTCTTTAGAGACCTTAATTTGCGTGTACGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTTCACTAGTCCAAAGATTCTATGAGCCGACATCGGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCCTAAGAAAGCATATTGCAATGGTCCCTCAAGAGCCATGCTTGTTTGCTGCTTCCATATATGATAATATAGCTTATGGCCATGAATCAGCCACCGAAGCCGAGATTATTGAAGCTGCTACTTTGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCAGGTGGACAGAAACAAAGAATTGCAATTGCCCGTGCATTGATCAGGAAGGCAGAGCTTATGCTATTAGACGAGGCTACAAGTGCACTCGATGCTGAGTCAGAGCGATCAGTTCAGGAGGCGCTCGACCGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCCCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGCAAAGTTTCAGAACAGGGATCACACTCCCATTTGTTGAAAAATTACCCTGATGGGTGTTACGCTAAGATGATTCAGTTACAAAGATTCACACACAGCCAAGTCATTGGTATGACATCTGGTTCAACTTCCTCAGCAAGAACTATAGAGGATGAGAAGAGAGATAGCTAG 4086 46.18 MSQYSQEIKTTEQWKWSEMQGLELLSSHPLPPPDPFITNNPTPENTDPEHLRPTQEPQDGVGRAKYREMESTTDSKKENGGGGGGSTSGEKPEAVTAIGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGFKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFAYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPEADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLCALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAILKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPNVTQVPDKLRGEVELKHVDFSYPTRPDILVFRDLNLRVRAGKTLALVGPSGCGKSSVISLVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYAKMIQLQRFTHSQVIGMTSGSTSSARTIEDEKRDS* 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30032241 30052328 - CsaV3_3G035990.1 Csa03g03293 524198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03293 1361 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 771 1058 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g03293 1361 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 116 404 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g03293 1361 SMART AAA_5 466 652 IPR003593 -
Csa03g03293 1361 SMART AAA_5 1121 1313 IPR003593 -
Csa03g03293 1361 Pfam ABC transporter 457 606 IPR003439 GO:0005524
Csa03g03293 1361 Gene3D ABC transporter type 1, transmembrane domain 750 1059 IPR036640 GO:0005524|GO:0016021
Csa03g03293 1361 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 115 1337 - -
Csa03g03293 1361 CDD ABC_6TM_Pgp_ABCB1_D2_like 761 1076 - -
Csa03g03293 1361 CDD ABC_6TM_Pgp_ABCB1_D1_like 115 402 - -
Csa03g03293 1361 ProSitePatterns ABC transporters family signature. 1233 1247 IPR017871 GO:0005524
Csa03g03293 1361 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1094 1330 IPR003439 GO:0005524
Csa03g03293 1361 MobiDBLite consensus disorder prediction 49 75 - -
Csa03g03293 1361 MobiDBLite consensus disorder prediction 24 91 - -
Csa03g03293 1361 CDD ABC_MTABC3_MDL1_MDL2 1094 1333 - -
Csa03g03293 1361 Pfam ABC transporter 1113 1261 IPR003439 GO:0005524
Csa03g03293 1361 CDD ABC_MTABC3_MDL1_MDL2 439 678 - -
Csa03g03293 1361 Coils Coil 1351 1361 - -
Csa03g03293 1361 Gene3D ABC transporter type 1, transmembrane domain 102 692 IPR036640 GO:0005524|GO:0016021
Csa03g03293 1361 Gene3D ABC transporter type 1, transmembrane domain 1060 1337 IPR036640 GO:0005524|GO:0016021
Csa03g03293 1361 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 439 675 IPR003439 GO:0005524
Csa03g03293 1361 SUPERFAMILY ABC transporter transmembrane region 103 417 IPR036640 GO:0005524|GO:0016021
Csa03g03293 1361 Pfam ABC transporter transmembrane region 117 389 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g03293 1361 Pfam ABC transporter transmembrane region 773 1041 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g03293 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1087 1333 IPR027417 -
Csa03g03293 1361 SUPERFAMILY ABC transporter transmembrane region 758 1078 IPR036640 GO:0005524|GO:0016021
Csa03g03293 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 678 IPR027417 -
Csa03g03293 1361 ProSitePatterns ABC transporters family signature. 578 592 IPR017871 GO:0005524
Csa03g03293 1361 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 115 1337 IPR039421 -
Csa03g03293 1361 Gene3D - 429 679 IPR027417 -
Csa03g03293 1361 Gene3D - 1083 1334 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03293 Csa-Chr3:30032241 Csa05g02977 Csa-Chr5:30108267 0 dispersed
Csa07g02331 Csa-Chr7:21600158 Csa03g03293 Csa-Chr3:30032241 1.50E-09 dispersed
Csa01g02206 Csa-Chr1:19114960 Csa03g03293 Csa-Chr3:30032241 3.65E-31 transposed
Csa02g01637 Csa-Chr2:15502991 Csa03g03293 Csa-Chr3:30032241 4.96E-13 transposed
Csa03g03430 Csa-Chr3:30871658 Csa03g03293 Csa-Chr3:30032241 5.03E-11 transposed
Csa05g00563 Csa-Chr5:3690920 Csa03g03293 Csa-Chr3:30032241 7.76E-74 transposed
Csa05g01807 Csa-Chr5:21374283 Csa03g03293 Csa-Chr3:30032241 7.49E-84 transposed
Csa05g02257 Csa-Chr5:25216771 Csa03g03293 Csa-Chr3:30032241 7.40E-101 transposed
Csa06g01126 Csa-Chr6:9341071 Csa03g03293 Csa-Chr3:30032241 1.56E-59 transposed
Csa06g01132 Csa-Chr6:9400380 Csa03g03293 Csa-Chr3:30032241 1.52E-14 transposed
Csa07g02332 Csa-Chr7:21601956 Csa03g03293 Csa-Chr3:30032241 2.23E-96 transposed
Csa03g02311 Csa-Chr3:20609983 Csa03g03293 Csa-Chr3:30032241 0 transposed
Csa03g03293 Csa-Chr3:30032241 Csa06g01223 Csa-Chr6:10338629 2.95E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03293 K05658 - csv:101220974 2492.61