Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03295 ATGGATATCACGATGAACAAATCTTTCAATCCCCAATCGCAAGTTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTGTTTCATTCCTCTTTCGAAACTCCTCTTCTTATCCCAACGCCCTTGCCCTTGTCGACGCTGACTCCGGCGAATCCCTCACTTTCCGTCAGCTTCAAATCCAAGTCTCCAAGCTCGCTCATGTGTTCATCCAACTCGGGATTCAAAAAGGCGATGTGGTTCTCATATTCGCGCCCAATTCCATTCACTTCCTTGTTTGTTTCTTCGCCATCGTCGCCATCGGAGCCATTGCCACCACTTGTAATCCTGCTTACACTTCCGCTGAACTGTCAAAACAAGTCGCTAACTGCAAACCTAAGCTCGTAATCACCGTTCCCGAACTCTGGGACGTAATCGGTAAACTCAACTTACCTTCTATAATTCTGGGTTCTAAAATTTCTTCAAAATTTTCCCGTTCCAACATCTGGGCTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCTCTTTTGTATTCATCTGGGACGACAGGGATCAGTAAAGGAGTGATTTTAACTCACAGAAATTTCATAACGGCGTCTTTAATGGTGACTCAAGATCAAGAGCTTCTTGGTGATCCCAGAAACGTGTTTTTATGTTTTCTCCCAATGTTCCATGTATTTGGTCTTTCTATAGTTGTTAACTCGCAGCTTCAAAGGGGAAACACCGTTGTTTCAATGGCAAAGTTTGAGCTGGAAAAGGCTTTAGGGTTGGTGATGAAGTACAAGATCACTCATCTTTATGTTGTTCCCCCTGTAATTATAGCTTTGACAAAGCAAAAGGTAGTGAAAAATTACGACTTGTCGTCGTTGCGGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGATGAATGCTCTAAGATTATACCTCAGGCCAGGATCATCCAGGGATATGGTATGACAGAAACTTGTGGAGTAATTTCAGTGGAGAATGTGGGAGTAGAATCTACCCAATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGCCCAAATTTTGAGTATAGAAACACAGAAACGTCTTCCACCTGGCGAAACTGGGGAAATTTGCGTCCGTGGACCAAATATGATGAAAGGATATTTCAACAATCAGAAAGCCACCAGCCAAACTATAGATGATCAGGGATGGGTACATACTGGAGATATTGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTCATCAAATGTTATGGTTTTCAGGTTGCACCAGCAGAGCTTGAAGCGCTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCCCATCCTGATGATAAAGCCGGTGAAGTCCCTATTGCATTTGTTGTTCGTTCTCCCAATAGCTCGATAAGCGAAGAAGATGTTAAAATTTTTGTCGCGGGACAGGTTGCACCATTCAAGAGATTAAGAAAAGTAACATTCACAAGTAGTGTTCCGAAGTCGGCTTCAGGAAAACTTCTGAGAAGGGAGGTCATAGCACAAGTCCGAGCCAAGATGTAA 1638 44.08 MDITMNKSFNPQSQVYTSRRPPIHFPTDPTISIVSFLFRNSSSYPNALALVDADSGESLTFRQLQIQVSKLAHVFIQLGIQKGDVVLIFAPNSIHFLVCFFAIVAIGAIATTCNPAYTSAELSKQVANCKPKLVITVPELWDVIGKLNLPSIILGSKISSKFSRSNIWAYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITASLMVTQDQELLGDPRNVFLCFLPMFHVFGLSIVVNSQLQRGNTVVSMAKFELEKALGLVMKYKITHLYVVPPVIIALTKQKVVKNYDLSSLRQILSGAAPLGKDVMDECSKIIPQARIIQGYGMTETCGVISVENVGVESTQSGATGSLVSGVEAQILSIETQKRLPPGETGEICVRGPNMMKGYFNNQKATSQTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPHPDDKAGEVPIAFVVRSPNSSISEEDVKIFVAGQVAPFKRLRKVTFTSSVPKSASGKLLRREVIAQVRAKM* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30061837 30067043 - CsaV3_3G036010.1 Csa03g03295 524200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03295 545 Gene3D - 443 544 IPR045851 -
Csa03g03295 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 8 544 - -
Csa03g03295 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Csa03g03295 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 544 - -
Csa03g03295 545 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Csa03g03295 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Csa03g03295 545 Pfam AMP-binding enzyme 39 447 IPR000873 -
Csa03g03295 545 CDD 4CL 25 536 - -
Csa03g03295 545 Gene3D - 14 442 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03295 Csa-Chr3:30061837 Csa04g02685 Csa-Chr4:26054439 2.88E-150 dispersed
Csa05g00204 Csa-Chr5:1231167 Csa03g03295 Csa-Chr3:30061837 6.50E-24 dispersed
Csa06g03851 Csa-Chr6:30549914 Csa03g03295 Csa-Chr3:30061837 6.69E-29 dispersed
Csa02g02057 Csa-Chr2:18865575 Csa03g03295 Csa-Chr3:30061837 1.56E-10 transposed
Csa03g02013 Csa-Chr3:15994880 Csa03g03295 Csa-Chr3:30061837 1.90E-36 transposed
Csa05g00293 Csa-Chr5:1839970 Csa03g03295 Csa-Chr3:30061837 1.38E-59 transposed
Csa05g00464 Csa-Chr5:3013509 Csa03g03295 Csa-Chr3:30061837 9.08E-61 transposed
Csa05g01470 Csa-Chr5:16601391 Csa03g03295 Csa-Chr3:30061837 2.94E-34 transposed
Csa04g01368 Csa-Chr4:13814305 Csa03g03295 Csa-Chr3:30061837 4.65E-18 transposed
Csa01g01352 Csa-Chr1:8805865 Csa03g03295 Csa-Chr3:30061837 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03295 K01904 - csv:101204417 1065.45