Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03303 ATGGCAACCTCCGGCGACCCCTTCTGGCATCAGTTGCTCTTTGGACGGTGGTTCTCAGCCTTTGCCTCCATTCTCATGATGTCCGTCTCCGGGGCCGCCTTCACGTTTGCCCTCTACTCCTCCGACATCAAATCTGCCTTTGGCTACGACCAAACCACCCTCAATTTGCTCAGCTTCTTCAAGGCCTTAGGCGGCAATGCCGGCATCATCTGCGGTCTCATCAATGAGGTAGCTCCGACTTGGATGATTCTTCTAATCGGCGCCGTCATGAACCTTTTTGGCTACACCATGATTTGGCTAGCCGTAACCAAACGGATCCCCAAGCCCCAAATATGGCATATGTGTCTCTACATTTGCATCGGAGCTAATTCTCAGACCTTCACAAATACTGGGGCTATTGTAACCTGTGTCAATAACTTCCCGCAAAATCGTGGTTGTGTTTTGGGGCTTTTGAAGGGTTACGTTGGCTTAAGCGGCGCCATTTTGTCCCAGCTTTACTTTGCCTTTTATGGCAACAATTCCAAATGTTTTATTCTCTTAATCGCTTGGTTTCCCGCCTCCATCACTGTTGTTTTCTTCCGTTCCGTTCGCATCATTAAGGATCTCCGGCTGCCCAACGAGGCCAAAGTTTTATACCATATCCTTTATATTTCTCTCGGCCTTGCGGGGTCGTTAATGGTCGTACCCGGTTTCAACAAATACAATACGTCGGAAGTGCCATTGTTAGAGGAACTGATTGTTTGGAAGAGTAAAATCGGAAATCCAAATGGACAACTAGAGTTAGCATCTCAACAACCACCGCCGCCACTTATCTCGGCAGTGCCACTGAGCCCTCCGTCGGACTCCTGCTTTAAAAACATGTTTAAACCCTCAAACAGAGGAGAGGACTACACAATCCCTCAAGCCATTTTCAGCGTCGATATGATCATTCTTTTTATCGCCTTAATCTGTGGTGTCGGTGGAACGTTGGCGGCTATGGACAATTTAGGTCAAATCGGAGAGTCTTTGGGGTACCCATCTCAGAGTACCACCACATTCATCTCTCTGGTCAGCATATGGAATTACCTCGGCCGTGTAGCCTCCGGATTCGTATCGGAATATTTCTGGAAAAAGTACAAAGTCCCACGTCCTCTATTTCTCTTCGGGACGCTTATTTTATCCTGCGTCAGCCATCTTCTAATCGCATTCGGAGTTCCACATTCACTGTATTTTTCTTCAATCATAATTGGGTTCTGCTTTGGAGCGCAGTTGCCATTGATCTTGGCAATCGTATCGGAAATTTTTGGGTTGAAGTACTATGCGACTCTAAGCGATTTGGGAGTAGCTGCAAACCCTATTGGGACGTATATTATGAATGTGAAAGTGATGGGTCATTTGTACGACAGGGAGGCTGAAGGCAGATGGAGGGAGCAGGGGAGAATTTGA 1425 47.3 MATSGDPFWHQLLFGRWFSAFASILMMSVSGAAFTFALYSSDIKSAFGYDQTTLNLLSFFKALGGNAGIICGLINEVAPTWMILLIGAVMNLFGYTMIWLAVTKRIPKPQIWHMCLYICIGANSQTFTNTGAIVTCVNNFPQNRGCVLGLLKGYVGLSGAILSQLYFAFYGNNSKCFILLIAWFPASITVVFFRSVRIIKDLRLPNEAKVLYHILYISLGLAGSLMVVPGFNKYNTSEVPLLEELIVWKSKIGNPNGQLELASQQPPPPLISAVPLSPPSDSCFKNMFKPSNRGEDYTIPQAIFSVDMIILFIALICGVGGTLAAMDNLGQIGESLGYPSQSTTTFISLVSIWNYLGRVASGFVSEYFWKKYKVPRPLFLFGTLILSCVSHLLIAFGVPHSLYFSSIIIGFCFGAQLPLILAIVSEIFGLKYYATLSDLGVAANPIGTYIMNVKVMGHLYDREAEGRWREQGRI* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30105502 30106967 - CsaV3_3G036090.1 Csa03g03303 524208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03303 474 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 7 228 - -
Csa03g03303 474 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 278 467 - -
Csa03g03303 474 CDD MFS_Mch1p_like 15 466 - -
Csa03g03303 474 SUPERFAMILY MFS general substrate transporter 20 449 IPR036259 -
Csa03g03303 474 Pfam Nodulin-like 16 229 IPR010658 -
Csa03g03303 474 Gene3D MFS general substrate transporter like domains 279 463 IPR036259 -
Csa03g03303 474 PANTHER MFS TRANSPORTER 7 228 - -
Csa03g03303 474 PANTHER MFS TRANSPORTER 278 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03303 Csa-Chr3:30105502 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa03g03303 Csa-Chr3:30105502 Csa03g03306 Csa-Chr3:30122257 0 proximal
Csa03g03303 Csa-Chr3:30105502 Csa05g02776 Csa-Chr5:28446206 0 wgd
Csa03g03303 Csa-Chr3:30105502 Csa06g02620 Csa-Chr6:23040506 3.17E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03303 - - cmo:103486508 772.696