Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03306 ATGGCAGCCTCATCCTCAAATCCCACCTCCTCTAACCCCTTCTGGTACCAGTTTCTCTTTGGCCGCTGGTTCTCTGTCCTCGCTTCCATTCTCATCATGTCCGTCGCCGGTGCTACCTACATGTTCGCCCTCTACTCCTCCGACATCAAATCTTCCTTAGGCTACGACCAAACCACCCTCAATTTGCTCAGTTTCTTCAAGGACTTGGGCGGCAATGTTGGCGTCATCAGTGGTCTCACCAACGAGGTCGCTCCTGCCTGGGTCGTTCTTCTTATTGGTGCCGTCATGAACCTTTTTGGCTACACCATGATTTGGCTGGCCGTAACTAAAAGAATACCCAAACCCCAAATCTGGCATATGTGTCTCTATATCACCATCGGAGCTAATTCTCAGACCTTTGCAAATACTGGGGCTCTTGTAACCTGCGTCAAAAACTTCCCGGAAAGTCGTGGTAGTGTTTTGGGGCTTTTGAAGGGGTTCGTTGGCTTAAGCGGCGCCATTTTGTCCCAACTTTACCGTGCCTTTTATGGCAATAATCCCGAATCTCTTATCCTCTTAATCGCTTGGCTTCCCGCTGCCGTCTCTGTTGTTTTGCTCCGTTTCGTTCGCATCATTAAGGATCTCCGGCAGCCCAACGAGCTCAAAGTTTTTTACCATTTCCTTTACATTTCTCTCGGCCTTGCTGGGACTCTAATGGTTTTGATTATTTTGCAAAGTCTTCTCCGATTTCAACAAATACAATACGTCGGTAGTGCCATTGTTGTGATTGTTCTGCTTTTACTACCTCTGACCATTGTTTTCAGAGAGGAATTGAGTGTTTGGAAGAGTAAAATTGCAAGCCCAGTTTTACAATTAGAGTCGGCATCTCAACAACCACCGCCGCCACTGACTTCGACGGTGTCTCTTGCCCCATCGAGCCCTCCGTCGGAATCCTGCTTTAAAAACATGTTTAATCCTCCAAGCAGAGGAGAAGACTACACAATCCCACAAGCCATTTTCAGTATGGATTTGATAATTCTTTTTATGGCCACAATTTGTGGTGTCGGTGGAACATTGACGGCGATCGACAATTTGGGCCAAATCGGAGAGTCTTTGGGGTACCAATCTCACAGTATCACCACATTCATCTCTCTCGTCAGCATATGGAACTACCTCGGCCGTGTGGTCTCCGGATTCGTATCGGAATATTTCTGGAAAAAGTACAAAGTCCCACGTCCTCTGTTTCTCTTCGCGACACTTATTCTGTCCTGCGTCGGTCATCTTCTAATAGCATTCGGAGTTCCGAATTCATTGTATTTTTCTTCAATCGTTATCGGGTTCTGCTTCGGCGCACAGTGGCCATTGATCTATGCAATCATATCGGAGATTTTCGGGTTGAAGTACTACGCGACTTTATCCAGTATGAGTGGAGGGGCGAGTCCGATTGGGGCATATATCTTGAACGTGAGAGTGGCGGGTCATTTGTACGACAGAGAGGCGCAAAGGCAGATGGAGGCAACGGGGCGACGGAGAAACATAGGAGAGGATTTGAGTTGCTTAGGAGTGGAATGTTACCGAAAGGCATTTCTTATAATCACGGCGGCGACGGTATTCGGGGCACTTGTTTCGCTGATTTTGGTGGTTCGGACATGGAAGTTCTATAAGGGCGATATTTACCGGAAGTTCAGAGAGGTGGAAGGTGAAGACATCGAAATGAAAATGGCCGCTCCGACCAACGGTACGTTGACGGCAGCGAAAAACTGA 1743 47.68 MAASSSNPTSSNPFWYQFLFGRWFSVLASILIMSVAGATYMFALYSSDIKSSLGYDQTTLNLLSFFKDLGGNVGVISGLTNEVAPAWVVLLIGAVMNLFGYTMIWLAVTKRIPKPQIWHMCLYITIGANSQTFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILSQLYRAFYGNNPESLILLIAWLPAAVSVVLLRFVRIIKDLRQPNELKVFYHFLYISLGLAGTLMVLIILQSLLRFQQIQYVGSAIVVIVLLLLPLTIVFREELSVWKSKIASPVLQLESASQQPPPPLTSTVSLAPSSPPSESCFKNMFNPPSRGEDYTIPQAIFSMDLIILFMATICGVGGTLTAIDNLGQIGESLGYQSHSITTFISLVSIWNYLGRVVSGFVSEYFWKKYKVPRPLFLFATLILSCVGHLLIAFGVPNSLYFSSIVIGFCFGAQWPLIYAIISEIFGLKYYATLSSMSGGASPIGAYILNVRVAGHLYDREAQRQMEATGRRRNIGEDLSCLGVECYRKAFLIITAATVFGALVSLILVVRTWKFYKGDIYRKFREVEGEDIEMKMAAPTNGTLTAAKN* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30122257 30124674 + CsaV3_3G036120.1 Csa03g03306 524211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03306 580 CDD MFS_Mch1p_like 21 533 - -
Csa03g03306 580 SUPERFAMILY MFS general substrate transporter 222 545 IPR036259 -
Csa03g03306 580 PANTHER MFS TRANSPORTER 10 572 - -
Csa03g03306 580 Pfam Nodulin-like 22 267 IPR010658 -
Csa03g03306 580 MobiDBLite consensus disorder prediction 287 306 - -
Csa03g03306 580 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 10 572 - -
Csa03g03306 580 SUPERFAMILY MFS general substrate transporter 8 207 IPR036259 -
Csa03g03306 580 Gene3D MFS general substrate transporter like domains 331 546 IPR036259 -
Csa03g03306 580 Pfam Major Facilitator Superfamily 344 539 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03306 Csa-Chr3:30122257 Csa06g02620 Csa-Chr6:23040506 0 dispersed
Csa03g03303 Csa-Chr3:30105502 Csa03g03306 Csa-Chr3:30122257 0 proximal
Csa03g03306 Csa-Chr3:30122257 Csa05g02773 Csa-Chr5:28438039 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03306 - - csv:101216551 1133.24