Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03313 ATGCCGTTTCAAAGGATAGTTATCGCCGTCGGTCGGCCGGAGGAGGCCACCCATCCCGCTGCCCTGAAGGCCGCTTTGGCCGAGTTTATTTCTACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTCGCTTTCTCTAAGCTCACCCATAATTCACCTACAACTCCTGCTGGCCTCGTCATCGCCTCCATAGCTCATGGCTTTGCCCTTTTTGTCGGTGTCTCCACCGCCGCAAACATCTCCGGCGGACACCTTAACCCCGCCGTGACTTTCGGAGCTTTGCTCGGCGGTAACATCACTATCCTTCGCGGCATTCTTTATTGGATCGCTCAGCTCCTCGGCGCCGTCGTCGCTAACTTGTTGCTCAAGTTCGTGATCGTCGACGTGGCAATTACGGGATTCTTGCCAACAGCAGGGGTTGGAATATGGGAAGCATTTGTATTCGAGATTGTAATGACATTCGGTTTAGTCTACACTGTCTACGCCACCGCCATTGATCCCAAAAGAGGTGAGGTGGGAGTCATTGCACCCATCGCCATCGGTTTAATCGTGGGCGCTAACATTTTGGTGGGCGGCCCATTCACCGGTGCCTCCATGAACCCTGCCGTCGCCTTCGGACCTGCCGTCATCTCGTGGTCTTGGGCTAACCATTGGATCTACTGGGCTGGCCCTCTCATCGGCGGCGGGTTAGCTGGCATTGTGTACGAACTCTTCTTCATTGGGTTCACCCACGAGCCTCTTCCCACTGCAGAGTACTGA 762 55.12 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTTPAGLVIASIAHGFALFVGVSTAANISGGHLNPAVTFGALLGGNITILRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPTAGVGIWEAFVFEIVMTFGLVYTVYATAIDPKRGEVGVIAPIAIGLIVGANILVGGPFTGASMNPAVAFGPAVISWSWANHWIYWAGPLIGGGLAGIVYELFFIGFTHEPLPTAEY* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30151604 30154301 - CsaV3_3G036190.1 Csa03g03313 524218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03313 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Csa03g03313 253 CDD MIP 23 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Csa03g03313 253 PANTHER AQUAPORIN-8 7 253 IPR034294 -
Csa03g03313 253 TIGRFAM MIP: MIP family channel proteins 27 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03313 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Csa03g03313 253 PANTHER AQUAPORIN TIP1-1 7 253 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03313 Csa06g02624 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00765 Csa-Chr1:4860621 Csa03g03313 Csa-Chr3:30151604 2.97E-93 dispersed
Csa03g03313 Csa-Chr3:30151604 Csa05g01810 Csa-Chr5:21392695 6.96E-105 dispersed
Csa05g00519 Csa-Chr5:3336038 Csa03g03313 Csa-Chr3:30151604 9.62E-58 transposed
Csa03g03313 Csa-Chr3:30151604 Csa06g02624 Csa-Chr6:23064934 1.47E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03313 K09873 - csv:101222386 479.559