Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03317 | ATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCCGCCACTGCACAAAATGAAGCTATTGATCGTAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCTTATTTTATGCGCAATCATCTTGGAAGCTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCTGCCCGTGAAGCTAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCCGGTTATCGAGTAACAAAGCAATTTGATTCTGAAACAAAGCAGCGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGGTTTATGTCTTCTTACGAGCAGCGTGTGCAACCTTTTGACAAACGATACCAATATCTTCTGTTTGCAGCCGAACCATATGAGATAATTGCATTCAAGGTTCCAAGTACAGAGATAGACAAATCGACTCCAAAATTCTTTTCACACTGGGATCCGGACTCTAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAATGGAACAGTGCCATCTGGTGCACCCCCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCACCCCAGCAAGGAGCACCACCAAGAGTTCCTCCTCCTCCAATGCCAGGGTCCTTGCCGCCTCCACCTTCTGTAATGGCCAATGGCCCTCCTAGGCCAATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCACCACCTCCCATTGGCAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGGCCTCCAATGCCGCCTCCTCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCACCACCACCACCACCCAATATGGGATAG | 1026 | 51.27 | MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPIGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG* | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30171418 | 30174418 | + | CsaV3_3G036230.1 | Csa03g03317 | 524222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03317 | 341 | MobiDBLite | consensus disorder prediction | 313 | 341 | - | - | |
Csa03g03317 | 341 | MobiDBLite | consensus disorder prediction | 217 | 302 | - | - | |
Csa03g03317 | 341 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 1 | 335 | - | - | |
Csa03g03317 | 341 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 110 | 204 | IPR031781 | - | |
Csa03g03317 | 341 | SMART | ZnF_U1_5 | 49 | 83 | IPR003604 | GO:0003676|GO:0008270 | |
Csa03g03317 | 341 | MobiDBLite | consensus disorder prediction | 214 | 341 | - | - | |
Csa03g03317 | 341 | ProSiteProfiles | Zinc finger matrin-type profile. | 52 | 82 | IPR000690 | GO:0003676|GO:0005634|GO:0008270 | |
Csa03g03317 | 341 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 83 | IPR036236 | - | |
Csa03g03317 | 341 | PRINTS | Proline rich extensin signature | 215 | 236 | - | - | |
Csa03g03317 | 341 | PRINTS | Proline rich extensin signature | 236 | 252 | - | - | |
Csa03g03317 | 341 | PRINTS | Proline rich extensin signature | 255 | 272 | - | - | |
Csa03g03317 | 341 | PRINTS | Proline rich extensin signature | 277 | 302 | - | - | |
Csa03g03317 | 341 | Gene3D | - | 93 | 219 | - | - | |
Csa03g03317 | 341 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa03g03317 | 341 | Gene3D | Classic Zinc Finger | 46 | 89 | - | - | |
Csa03g03317 | 341 | SMART | CactinC_cactus_3 | 89 | 216 | - | - | |
Csa03g03317 | 341 | Pfam | Zinc-finger of C2H2 type | 52 | 76 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03317 | K12826 | - | csv:101202831 | 480.715 |