Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03317 ATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCCGCCACTGCACAAAATGAAGCTATTGATCGTAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCTTATTTTATGCGCAATCATCTTGGAAGCTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCTGCCCGTGAAGCTAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCCGGTTATCGAGTAACAAAGCAATTTGATTCTGAAACAAAGCAGCGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGGTTTATGTCTTCTTACGAGCAGCGTGTGCAACCTTTTGACAAACGATACCAATATCTTCTGTTTGCAGCCGAACCATATGAGATAATTGCATTCAAGGTTCCAAGTACAGAGATAGACAAATCGACTCCAAAATTCTTTTCACACTGGGATCCGGACTCTAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAATGGAACAGTGCCATCTGGTGCACCCCCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCACCCCAGCAAGGAGCACCACCAAGAGTTCCTCCTCCTCCAATGCCAGGGTCCTTGCCGCCTCCACCTTCTGTAATGGCCAATGGCCCTCCTAGGCCAATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCACCACCTCCCATTGGCAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGGCCTCCAATGCCGCCTCCTCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCACCACCACCACCACCCAATATGGGATAG 1026 51.27 MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPIGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30171418 30174418 + CsaV3_3G036230.1 Csa03g03317 524222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03317 341 MobiDBLite consensus disorder prediction 313 341 - -
Csa03g03317 341 MobiDBLite consensus disorder prediction 217 302 - -
Csa03g03317 341 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 335 - -
Csa03g03317 341 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Csa03g03317 341 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Csa03g03317 341 MobiDBLite consensus disorder prediction 214 341 - -
Csa03g03317 341 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Csa03g03317 341 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Csa03g03317 341 PRINTS Proline rich extensin signature 215 236 - -
Csa03g03317 341 PRINTS Proline rich extensin signature 236 252 - -
Csa03g03317 341 PRINTS Proline rich extensin signature 255 272 - -
Csa03g03317 341 PRINTS Proline rich extensin signature 277 302 - -
Csa03g03317 341 Gene3D - 93 219 - -
Csa03g03317 341 MobiDBLite consensus disorder prediction 1 21 - -
Csa03g03317 341 Gene3D Classic Zinc Finger 46 89 - -
Csa03g03317 341 SMART CactinC_cactus_3 89 216 - -
Csa03g03317 341 Pfam Zinc-finger of C2H2 type 52 76 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03317 K12826 - csv:101202831 480.715