Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03319 ATGGCGAACCATGCATTCCTTCTTTCATCATTCTTCTTCTTCCTTCTCCATTTTGGAGTTGAAGCTGCAAAAATGACTGTGAAAAACAATTGTGGGATAAGCATATGGCCGGCAACATTAACGAGCGGTCCAGGCCAACCACAACTATCAACAACTGGGTTCAAGTTAGCTCCTGGAGAATCGAAGTCATTTAACGTCCCCGCACCGTGGACTGGTCGGGTATGGGCACGAACCCGTTGCTCCAACAACGGTCGATTCACCTGCATGACTGGCGATTGCGGTCGTGGCCTCTCATGCAATGGCGCCGGAGGAGTTCCACCAGTCACACTAGCCGAATTCACCATTGCCCCCGATGGTGGCCAAGATTTCTACGATGTCAGCCTAGTGGACGGCTTCAACCTGCCAGTCACGATCACCATCCAAGGCGGCAAAGGGCCATGTCGATCATCAAACTGCCGTGCGGACGTGAACAAGGTGTGTCCAGCGGAGCTGCAGGTGAAATCAGGCAATGAAGTGATTGCTTGTAAGAGTGCTTGTCTTGCATTCAACAAACCTGAGTATTGCTGCACTGGTGAATTCAATGATCCTAAAAAGTGCAAGCCAACAAATTATTCGATGATCTTCGAGAGACAATGCCCAGAAGCTTACAGTTATGCATATGATGATAAGAACAGCACCTTTACTTGCAACAATAGGCCAAATTATTTGATCACATTTTGCGGTTGA 726 48.35 MANHAFLLSSFFFFLLHFGVEAAKMTVKNNCGISIWPATLTSGPGQPQLSTTGFKLAPGESKSFNVPAPWTGRVWARTRCSNNGRFTCMTGDCGRGLSCNGAGGVPPVTLAEFTIAPDGGQDFYDVSLVDGFNLPVTITIQGGKGPCRSSNCRADVNKVCPAELQVKSGNEVIACKSACLAFNKPEYCCTGEFNDPKKCKPTNYSMIFERQCPEAYSYAYDDKNSTFTCNNRPNYLITFCG* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30190090 30191658 + CsaV3_3G036250.1 Csa03g03319 524224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03319 241 CDD TLP-PA 26 240 - -
Csa03g03319 241 PANTHER PRU PROTEIN, PUTATIVE-RELATED 11 240 - -
Csa03g03319 241 ProSiteProfiles Thaumatin family profile. 22 241 IPR001938 -
Csa03g03319 241 PANTHER OS03G0233200 PROTEIN 11 240 IPR001938 -
Csa03g03319 241 PIRSF PR5 1 241 IPR001938 -
Csa03g03319 241 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Csa03g03319 241 PRINTS Pathogenesis-related protein signature 84 113 IPR001938 -
Csa03g03319 241 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Csa03g03319 241 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Csa03g03319 241 Pfam Thaumatin family 29 240 IPR001938 -
Csa03g03319 241 SUPERFAMILY Osmotin, thaumatin-like protein 24 240 IPR037176 -
Csa03g03319 241 ProSitePatterns Thaumatin family signature. 84 99 IPR017949 -
Csa03g03319 241 SMART tha2 25 241 IPR001938 -
Csa03g03319 241 Gene3D Thaumatin 23 240 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03319 Csa06g02628 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03319 Csa-Chr3:30190090 Csa05g03131 Csa-Chr5:31221722 7.31E-93 dispersed
Csa01g02393 Csa-Chr1:21226394 Csa03g03319 Csa-Chr3:30190090 1.12E-55 transposed
Csa03g03319 Csa-Chr3:30190090 Csa06g02628 Csa-Chr6:23121300 1.62E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03319 - - csv:101203304 507.679