Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03332 ATGAGGATCAAAACGAACTTCTTTTGGTTCTATACTCTTCTCATTGTAGCTCTTTTCATCACCATTGTCCTGCGTTCATTCCCGCTTCCCTTGACGGCTATTATTGCCACTGTTGGTCCTCACGACACTGCTTTTGAACTTGGCGTTTTCAGTAGTATAGTGAAAGGGAGTGGTTTGGATGAGATTTTATCTCTTGTGACTCAATATCTGTCCAAAACCCAATACCAATGGAGAGATGAGAAAAGTTGTGATGAGAAGAAATGGGACTCCAAGTTGATATCTTTGTACAATGTTTCACTCACTTTAACTGTTGATTTGAAGGGATGTGCAAATTTCAGCAGCGTACAAACTGCAGTGGATGCTGTTCCTGATTATGGCTCTTCAAGGACCCTTATCCTAATTGACTCTGGAATCTATAGGGAGAAGGTAGTGATAGAAGCCAACAAAACAAACTTGATAATTGAAGGTCAAGGTTACCTCAACACTGCAATAGAATGGAATGACACAGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTCACCATCTTTGCTTCAAACTTCATTGCCTACAACATCAGCTTCAAAAACACAGCTCCTGAGGCAACTCCAGGGACTGTTGGAGGACAAGCAGTTGCAGTTCGAATTGCAGGAGACGAAGCTGCTTTCTATGGATGTGGATTTTATGGAGCTCAAGACACACTTTATGATGACAAAGGAAGGCATTACTTCAAAGAATGTTTCATTCAAGGATCCATTGATTTCATCTTCGGCAATGCTCGATCGCTCTACGATGGTTGTAGGATCAAATCAATAGCAAAGGAAGTGTTGGGTGGTGGGGTGAGTGGAGCCATCACAGCTCATGGAAGGCAAACAAGAAGTGAGGAAACTGGTTTTGCTTTCATCAATTGCACCATCAGTGGCTCTGGGAAGGTGTGGCTTGGTCGTGCTTGGGGCGCTTGTGCCACCGTCGTATTCTCTAAAACGTATATGACCGATGTCGTTGCTGTGGACGGATGGAATGACTGGAGAGACCCTTCAAGAGACCAGAGTGTGTTGTTTGGGGAATATGAATGCTTTGGAGATGGTGCAAATTATAGGTTGAGAGTGCCATATTCAAAGCAGCTGAATCAAGTTGAAGCTCAGCATTACTTGGATGTTTCGTATGTTGATGGAAATCAATGGCTCATCAATCAACAAATCAACAGTACTTTGTCAACCATTTAA 1230 43.09 MRIKTNFFWFYTLLIVALFITIVLRSFPLPLTAIIATVGPHDTAFELGVFSSIVKGSGLDEILSLVTQYLSKTQYQWRDEKSCDEKKWDSKLISLYNVSLTLTVDLKGCANFSSVQTAVDAVPDYGSSRTLILIDSGIYREKVVIEANKTNLIIEGQGYLNTAIEWNDTANSTGGTTYSSSVTIFASNFIAYNISFKNTAPEATPGTVGGQAVAVRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNARSLYDGCRIKSIAKEVLGGGVSGAITAHGRQTRSEETGFAFINCTISGSGKVWLGRAWGACATVVFSKTYMTDVVAVDGWNDWRDPSRDQSVLFGEYECFGDGANYRLRVPYSKQLNQVEAQHYLDVSYVDGNQWLINQQINSTLSTI* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30254124 30256593 + CsaV3_3G036380.1 Csa03g03332 524237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03332 409 Gene3D - 95 407 IPR012334 -
Csa03g03332 409 ProSitePatterns Pectinesterase signature 2. 250 259 IPR033131 -
Csa03g03332 409 SUPERFAMILY Pectin lyase-like 98 397 IPR011050 -
Csa03g03332 409 Pfam Pectinesterase 103 393 IPR000070 GO:0030599|GO:0042545
Csa03g03332 409 PANTHER PECTINESTERASE 14-RELATED 19 403 - -
Csa03g03332 409 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 19 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01521 Csa-Chr3:11292633 Csa03g03332 Csa-Chr3:30254124 9.95E-79 dispersed
Csa03g03332 Csa-Chr3:30254124 Csa04g00726 Csa-Chr4:4940430 5.67E-128 dispersed
Csa03g03332 Csa-Chr3:30254124 Csa02g02065 Csa-Chr2:18904116 1.26E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03332 - - csv:101219157 820.846