Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03337 ATGCGGGCCTTCTCTTACTTGATCTTGGCCTTAGCATCCGTCCTTCTGCCGGCGACGGTGGTCTACTGTCGCTTCCCCGTTCCACTTCTCTCTCTGTACAGGGCTCTCCCTTCTTCTTCCCCTGTTCAACTCGAAACCCTTAGAGCTCGGGACCGACTCAGACATGCCAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTGCTCGTTGGGCTTTACTTTACCAAAGTCAAATTGGGCACTCCTCCAATGGAATTTACGGTGCAGATCGACACTGGAAGCGATATATTGTGGGTCAACTGCAATTCTTGCAATGGCTGCCCCAGATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCTAGCTCATCAAGTTCTTCACTCGTCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACGACTGCAACACAGTGTTTAACTCAGAGTAATCAATGCAGTTACACTTTTCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTTGACATGGTCATGGGACAATCTATGATTGCTAACTCTTCAGCTAGTGTTGTTTTTGGTTGTAGCACCTATCAATCAGGAGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTTATATCACAGTTGTCAGCTCGAGGGATAACCCCTAAAGTATTTTCCCATTGTTTAAAGGGAGAAGGAAATGGTGGTGGCATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATATCTGCAAAGCATCTCTGTCAATGGTCAGACACTGCCAATTGATCCATCTGTGTTTGCAACCTCAATAAATCGAGGAACTATTATAGACTCTGGGACAACATTGGCTTACCTTGTCGAAGAAGCATATACTCCATTTGTCAGTGCTATAACTGCTGCTGTTTCCCAGTCTGTAACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACCAGTGTGGGCGAGATATTTCCTCTGGTTAGCTTAAACTTCGCGGGCAGTGCATCCATGGTGTTAAAACCCGAGGAATATCTTATGCATCTAGGCTTTTATGATGGTGCTGCATTGTGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATTTTAGGAGATCTTGTTATGAAAGATAAGATATTTGTATACGATTTGGCTCGCCAGCGAATTGGGTGGGCGAGCTACGATTGTTCTCAAGCTGTAAATGTATCTGTCACATCTGGGAAGAATGAGTTCGTCAATGCAGGACAGTTAAGCGTGAGCAGCTCGTCCCGAGATAAGCTCCTTCAGTCACTAACTATGGAAGCACTAGCAATGTTAACGAGTCTCATTTTGTTCATCCACTCCCAGCTTCTATTAAAAAGAATCAAGAAATTAGCGAGCGGAAGTTGGATTCCAGTGTGGGATATGGCGCGTGTTTGTGTGATTTGCGTTTCAATGGCAGCAGTTTCTCAGCCTACGGCTCATGCCTCTCCGGCTTCCCTCTACGTTGGAGACCTTCATCCTGATGTTACTGATGGACAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTTGCCTCTGTTCGTATCTGTAGAGATTCTTCCACTGGACGCTCTCTCTCTTATGGCTACGTCAATTTTATTTCTCCTCAAGATGCAACCAATGCCATAGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCACGTCGCGATGCTGATGCAAGAAAAAGTGGAATTGGGAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGAAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGAATCTGCAAATGCTGCCATAGAGTCACTGAATGGATTTACTGTTGGGGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAAAGTGATCGAGTTTTGGCCAATCCTGATATTAAATATACCAATTTGTACGTGAAAAATCTTGACCCAGAAATTGGGGAAGAGCATTTGCAGGAGAAATTCTCTGAGTTTGGAAAAATTTCCAGCATGATTATTTCAAGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATCAACTTTGAAAACTCTGATGATGCCAAACGTGCATTGGAAACACTTAATGGATCACAACTTGGTTCTAAGGTTATCTACATTGCGAGGGCACAAAAGAAGACCGAGCGTGAGGAAGTATTACGTCGACATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATACAAGGGATCAAATGTGTATGTGAAGAACATCGATGATGATGTTACTGATGAAGAACTAAGAGAGCGTTTTAGTCAATTTGGCACCATCACTTCGTCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTTTCCAATCCCGATGAAGCTAAAAGAGCTGTGAACACTTTGCAAGGATGCATGTTTCACGGGAAGCCGCTCTATTTGGCAATAGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTGCTCAACGGCTGGCAGGGATACCAGGACCGTCAACTACAATTTTTCCTGGTGGTTACCCACCTTATTACTACCCAGCACCTGGTGTTGTTCCACCTGTAGCATCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGTATGAGGCCTGGGTGGAGACCTAACACGTATACATCTCCTGCACGACCTGGCTTTCAACCTTCACCACTACCTATTATACCGACTGCTTCGAGGCAACCCAGACAGAACAGAGGCAAAATGAATGGACCAATTCTTTCTCATCAGAATGGAGTCCAATCTGTCTCATATATGCAAAATTCACAAGATGCCAATCAGTCAGTAGTTACTGCAAAATCATCCAGCAATCAGCAGTGGACCGGACAGGTTAAGTATGTCCCAAATGCTCGCTCATGTGAAACGAACAAAACTTCTGGAGCCTCAGCTGCTGCTGCTGCTTTTAATTCTGTTGGAGATGTCTCTCAGGGGTCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTAGTCCAAAAGCGCAAGCCGGACCTTGCTGCGAAAATTACGGGCATGCTTCTGGAGATGGACAACTCGGAATTGCTACTCCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGACTAAGCTCTCCAACCAAGACACACTCAGTTTCTTACCAGCTGAGCTTGCAGTTAACTGA 3480 44.2 MRAFSYLILALASVLLPATVVYCRFPVPLLSLYRALPSSSPVQLETLRARDRLRHARILQGVVDFSVEGSSDPLLVGLYFTKVKLGTPPMEFTVQIDTGSDILWVNCNSCNGCPRSSGLGIQLNFFDASSSSSSSLVSCSDPICNSAFQTTATQCLTQSNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGQSMIANSSASVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSISVNGQTLPIDPSVFATSINRGTIIDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEEYLMHLGFYDGAALWCIGFQKVQEGVTILGDLVMKDKIFVYDLARQRIGWASYDCSQAVNVSVTSGKNEFVNAGQLSVSSSSRDKLLQSLTMEALAMLTSLILFIHSQLLLKRIKKLASGSWIPVWDMARVCVICVSMAAVSQPTAHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVASRPGLMFQPLGMRPGWRPNTYTSPARPGFQPSPLPIIPTASRQPRQNRGKMNGPILSHQNGVQSVSYMQNSQDANQSVVTAKSSSNQQWTGQVKYVPNARSCETNKTSGASAAAAAFNSVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKLSNQDTLSFLPAELAVN* 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30272598 30282729 - CsaV3_3G036430.1 Csa03g03337 524242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03337 1159 SMART poly_2 1076 1139 IPR002004 GO:0003723
Csa03g03337 1159 PANTHER POLYADENYLATE-BINDING PROTEIN 1062 1145 - -
Csa03g03337 1159 PANTHER POLYADENYLATE-BINDING PROTEIN 527 1052 - -
Csa03g03337 1159 Pfam Poly-adenylate binding protein, unique domain 1071 1136 IPR002004 GO:0003723
Csa03g03337 1159 MobiDBLite consensus disorder prediction 962 988 - -
Csa03g03337 1159 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 533 1137 IPR006515 GO:0003723
Csa03g03337 1159 SUPERFAMILY PABC (PABP) domain 1061 1147 IPR036053 GO:0003723
Csa03g03337 1159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 533 611 IPR000504 GO:0003723
Csa03g03337 1159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 621 698 IPR000504 GO:0003723
Csa03g03337 1159 Gene3D Acid Proteases 266 444 IPR021109 -
Csa03g03337 1159 Gene3D - 1062 1151 - -
Csa03g03337 1159 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
Csa03g03337 1159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 712 789 IPR000504 GO:0003723
Csa03g03337 1159 SUPERFAMILY RNA-binding domain, RBD 533 700 IPR035979 GO:0003676
Csa03g03337 1159 CDD RRM4_I_PABPs 814 892 - -
Csa03g03337 1159 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Csa03g03337 1159 Gene3D Acid Proteases 63 265 IPR021109 -
Csa03g03337 1159 Gene3D - 622 704 IPR012677 -
Csa03g03337 1159 SUPERFAMILY Acid proteases 75 441 IPR021109 -
Csa03g03337 1159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 815 892 IPR000504 GO:0003723
Csa03g03337 1159 CDD RRM2_I_PABPs 619 695 IPR045305 -
Csa03g03337 1159 SMART rrm2_1 622 694 IPR003954 GO:0003676
Csa03g03337 1159 SMART rrm2_1 713 785 IPR003954 GO:0003676
Csa03g03337 1159 SMART rrm2_1 816 888 IPR003954 GO:0003676
Csa03g03337 1159 CDD RRM1_I_PABPs 534 612 - -
Csa03g03337 1159 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Csa03g03337 1159 Coils Coil 784 804 - -
Csa03g03337 1159 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1064 1141 IPR002004 GO:0003723
Csa03g03337 1159 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Csa03g03337 1159 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Csa03g03337 1159 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Csa03g03337 1159 SUPERFAMILY RNA-binding domain, RBD 705 799 IPR035979 GO:0003676
Csa03g03337 1159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 714 782 IPR000504 GO:0003723
Csa03g03337 1159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 535 605 IPR000504 GO:0003723
Csa03g03337 1159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 623 691 IPR000504 GO:0003723
Csa03g03337 1159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 817 885 IPR000504 GO:0003723
Csa03g03337 1159 CDD pepsin_A_like_plant 79 437 IPR034161 -
Csa03g03337 1159 Gene3D - 520 621 IPR012677 -
Csa03g03337 1159 CDD RRM3_I_PABPs 711 790 - -
Csa03g03337 1159 SMART rrm1_1 816 888 IPR000504 GO:0003723
Csa03g03337 1159 SMART rrm1_1 534 607 IPR000504 GO:0003723
Csa03g03337 1159 SMART rrm1_1 622 694 IPR000504 GO:0003723
Csa03g03337 1159 SMART rrm1_1 713 785 IPR000504 GO:0003723
Csa03g03337 1159 Gene3D - 801 902 IPR012677 -
Csa03g03337 1159 Gene3D - 705 800 IPR012677 -
Csa03g03337 1159 PANTHER RNA BINDING PROTEIN 1062 1145 - -
Csa03g03337 1159 PANTHER RNA BINDING PROTEIN 527 1052 - -
Csa03g03337 1159 SUPERFAMILY RNA-binding domain, RBD 813 906 IPR035979 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03337 Csa-Chr3:30272598 Csa06g00488 Csa-Chr6:4128153 4.54E-138 dispersed
Csa06g00834 Csa-Chr6:6697969 Csa03g03337 Csa-Chr3:30272598 4.08E-14 dispersed
Csa07g02046 Csa-Chr7:19815206 Csa03g03337 Csa-Chr3:30272598 4.31E-15 dispersed
Csa02g00839 Csa-Chr2:7662493 Csa03g03337 Csa-Chr3:30272598 1.35E-96 transposed
Csa06g00681 Csa-Chr6:5566102 Csa03g03337 Csa-Chr3:30272598 2.92E-10 transposed
Csa06g03368 Csa-Chr6:28047664 Csa03g03337 Csa-Chr3:30272598 1.34E-06 transposed
Csa01g03298 Csa-Chr1:29365882 Csa03g03337 Csa-Chr3:30272598 5.14E-95 transposed
Csa03g03337 Csa-Chr3:30272598 Csa06g02633 Csa-Chr6:23182726 0 wgd
Csa03g03337 Csa-Chr3:30272598 Csa06g01256 Csa-Chr6:10534832 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03337 K13126 - csv:101203793 1209.9