Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03345 ATGGCTCCGGGATTGGCAGTTGAAAATGGCAATACCCTTATGGCATCAGAACCTCAAATGTATCAAAAGGGTGTCAAACATCTTTGCGACAATGGCTTAAATAAGCTCCCTTCTAAATACATCCTCCCCAACTCTGACCGCCCCGACACTTCTGACTACTCTCCCCACCTTCACGTCTCCGGACCTCTCCAACTTCCCCTCATTGACTTTGCACAACTCCTTGGCCCCAACCGTCACCATGTCATTCATTCCCTCACCAAAGCTTGCCAAGAATATGGCTTTTTTCAGGTAATAAACCATGGAATTTCAAATGATGTGATAACAAACATGAGAGAGGTTTGTTCAAAATTCTTCGAGCTGCCATACGAGGAAAGAGCCAAATACATGTCATCCGACATGCATGCGACAGTACGTTATGGGACGAGCTTCAACCAAAACAAAGACAATGTTTATTGTTGGAGAGACTTCTTGAAGTTAACTTGTAACCCTAATGATCTTCACCAACTTCTCTCCGGCTGGCCGTCGTCTCCATCCGGATTCAAAGACTCTGCGTCAACGTACGTGGAGGAAACTCGAGGGCTGTTTTTGAGTTTGGTGAAAGCCATTGTTGAAAGCTTGGGAAAAGAAATAGATGAGAATGAAGAACAATTATTGTTAAATGAGTTTGAAAATGGAAGCCAATTAATGGTCGTGAATTGTTATCCAAAATGTCCCGAGCCAGAGCTAACCCTAGGAATGCCACCTCATTCTGATTATGGCTTTCTTACACTTCTTCTTCAAGATCAAGTTGAAGGACTTCAAATTCATTACAAACAAAAATGGGTCACTGTTCAACCTTTGCCAAATTCCTTTGTTGTCAACATTGGTGATCATCTAGAGATATTCAGCAATGGAAAATACAAGAGTGTTCTACATAGGGTTGTGGTTAATGCAAAGAAGACAAGAATTTCAGTGGCAACATTACATAGTCTTCCATTTGATTCAATAATAAAGCCATGGCCAAAGCTTGTGAATGAAGAAAATCCAAGGCTTTATAGGGACACTGATTTTGGTACCTTCCTTGAGTACATTTCCTCTTGCGAGCCTAAGAGGAAGAACTTCTTAGAATCTAGGAAAATTATTCATTAA 1128 41.22 MAPGLAVENGNTLMASEPQMYQKGVKHLCDNGLNKLPSKYILPNSDRPDTSDYSPHLHVSGPLQLPLIDFAQLLGPNRHHVIHSLTKACQEYGFFQVINHGISNDVITNMREVCSKFFELPYEERAKYMSSDMHATVRYGTSFNQNKDNVYCWRDFLKLTCNPNDLHQLLSGWPSSPSGFKDSASTYVEETRGLFLSLVKAIVESLGKEIDENEEQLLLNEFENGSQLMVVNCYPKCPEPELTLGMPPHSDYGFLTLLLQDQVEGLQIHYKQKWVTVQPLPNSFVVNIGDHLEIFSNGKYKSVLHRVVVNAKKTRISVATLHSLPFDSIIKPWPKLVNEENPRLYRDTDFGTFLEYISSCEPKRKNFLESRKIIH* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30321621 30324826 + CsaV3_3G036510.1 Csa03g03345 524250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03345 375 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-RELATED 18 373 - -
Csa03g03345 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 65 165 IPR026992 -
Csa03g03345 375 Pfam 2OG-Fe(II) oxygenase superfamily 228 322 IPR044861 -
Csa03g03345 375 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 373 - -
Csa03g03345 375 SUPERFAMILY Clavaminate synthase-like 22 357 - -
Csa03g03345 375 PRINTS Isopenicillin N synthase signature 85 102 - -
Csa03g03345 375 PRINTS Isopenicillin N synthase signature 249 270 - -
Csa03g03345 375 PRINTS Isopenicillin N synthase signature 284 310 - -
Csa03g03345 375 Gene3D - 21 360 IPR027443 -
Csa03g03345 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 224 324 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03345 - - - csv:101220578 764.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03345 Csa-Chr3:30321621 Csa05g00148 Csa-Chr5:825128 1.11E-83 dispersed
Csa03g03345 Csa-Chr3:30321621 Csa03g03068 Csa-Chr3:28895524 3.56E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1100 . . . . . Bpe03g01266 Bma04g01612 . Cmo06g00021 . . . . . . . Cpe08g01068 . . . . . . . . . . . . . . . . . . . . . Cme04g02112 Blo07g01376 . . . . . . . Sed02g0799 . . Cma06g00024 . Car06g00359 . . . Bhi11g02799 Tan08g1266 Cmetu04g1536 . . . . Cla10g01554 Cam10g1603 Cec10g1650 Cco10g1617 Clacu10g1617 Cmu10g2373 Cre10g1753 Lsi03g01618 Csa03g03345 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004081 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43