Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03346 ATGAAAATCATGATCATGACGTACGTACGTGGTCCTCTTTTTAACTTAGCATTTGGTGCCACTCCTTACAAAATAACACCATCCATCCATTCAACTCAACTACTCACTCTCAAAATCAAAATGGTCGTCGGAAACGAAACGCCCCCGATGGAGCAACACAATACCTCCACTACCGCCGACAGTGAAATCCAAAACAAAGCCAGATTAGCCATTATAGAGCTCGCCAACATGATCAGCGTTCCCATGTCCCTCAACGCCATCGTCCGCCTCAACGTCGCCGACGCCATCTGGCAAAACGGTTCCAACTCTCCTCTCTCCGCATCTGAGATCCTCGCTCGCGTGGTTCCGTCCGGCGGCGACGCCCATAATCTCGAGCGCATCTTACGTATGCTCACTAGCTACGGTGTTTTTGAGGAACATCTCAGCCCTAACTCATCTAACCACCGGTATTCCCTCACTGACGTCGGAAAAACTCTAGTCACGGACTCCGATGGCCTCTCCTACGCGCCGTACGTGCTTCAGCATCATCAGGACGCGCTTATGAGAGCGTGGCCGCGAGTGCACGAGGCGGCGATTGACTCAACGACGGAACCGTTCGTTAGAGCGAACGGTGAAGCGGCGTACAGTTATTATGGGAAGAAAACGGAGATGAACGAGTTGATGCAGAGAGCAATGGCGGGCGTATCGGTGCCGTTCATGAAGGCTGTATTGGACGGCTACGATGGGTTCAAAGGAGTTGAGAAATTAGTGGACGTTGGTGGAAGCGCAGGCGATTGCTTGAGGATGATTTTACAGAAATATCCTCACATTAAGGAAGGGATTAACTTCGATCTGCCGGAGGTGGTGGCTAGGGCTCCTACTATCCCCGGGGTGAGTCACGTTGGAGGTGATATGTTCAAGTCCATACCGACCGGAGACGCTATCTTCATGAAGTGGGTTCTATCTACGTGGACGGACGACGAATGCAAAATAATATTGGAGAATTGCTGCAAATCTCTCCCGGTGGGAGGAAAATTGATTGCCTGTGAGCCGACATTGCCGGAGAAGACGGATGAAAGCCACCGGACGCGTGCTCTTTTGGCCAGCGACGTATTCATCATGACCATTTACAAGGCTAAAAGTAAGCAGCGAACTGAGGAGCAGTTCCGGCAACTCGGCCTCTCCGCTGGATTCTCCGCCCTCCGACCATTTCATATCGATTACTTCTATTGTCTGTTGGAATTCCAAAAGTGA 1233 51.09 MKIMIMTYVRGPLFNLAFGATPYKITPSIHSTQLLTLKIKMVVGNETPPMEQHNTSTTADSEIQNKARLAIIELANMISVPMSLNAIVRLNVADAIWQNGSNSPLSASEILARVVPSGGDAHNLERILRMLTSYGVFEEHLSPNSSNHRYSLTDVGKTLVTDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDSTTEPFVRANGEAAYSYYGKKTEMNELMQRAMAGVSVPFMKAVLDGYDGFKGVEKLVDVGGSAGDCLRMILQKYPHIKEGINFDLPEVVARAPTIPGVSHVGGDMFKSIPTGDAIFMKWVLSTWTDDECKIILENCCKSLPVGGKLIACEPTLPEKTDESHRTRALLASDVFIMTIYKAKSKQRTEEQFRQLGLSAGFSALRPFHIDYFYCLLEFQK* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30330263 30333021 + CsaV3_3G036520.1 Csa03g03346 524251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03346 410 PANTHER OS02G0823400 PROTEIN 58 409 - -
Csa03g03346 410 PIRSF O-mtase 49 410 IPR016461 GO:0008168
Csa03g03346 410 PANTHER O-METHYLTRANSFERASE 58 409 IPR016461 GO:0008168
Csa03g03346 410 Gene3D - 52 164 IPR036388 -
Csa03g03346 410 SUPERFAMILY Winged helix DNA-binding domain 66 164 IPR036390 -
Csa03g03346 410 Pfam O-methyltransferase domain 190 392 IPR001077 GO:0008171
Csa03g03346 410 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 164 408 IPR029063 -
Csa03g03346 410 Gene3D Vaccinia Virus protein VP39 165 410 IPR029063 -
Csa03g03346 410 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 72 410 IPR016461 GO:0008168
Csa03g03346 410 Pfam Dimerisation domain 82 132 IPR012967 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03346 Csa-Chr3:30330263 Csa04g00859 Csa-Chr4:6091411 8.47E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03346 - - csv:101205175 741.495