Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03347 ATGTTCAGGTTGCACAGGAACCGGCATGCGAAATCAGGGGAGAAATTTGATTTCAAATTCTCCAATTTCAAGGCCACCCAGGTGCCTAAAGGTTGGGACAAGCTATTTGTATCTGTAATTTCTGAGCAAACTGGGAAGGCAATTGTCAGGTCAAGCAAAGCACCAGTTCGTAATGGAAGTTGCCAGTGGACTGAGTCTTTATCAGATTCCATTTGGGTTTCACAAGATGAAGTTTCTAAGGAGTTTGAGGATTGTAATTTCAAGCTTGTTGTGGCCATGGGGTCAGCAAGATCTAATATTCTTGGAGAGACTATGGTCAACATGACAAATTACATAGATTCCAAATCTTCTTCTGCAGTCTCACTTCCACTGAAAAAGTGCAACCATGGAACTATTTTACAAGTGAAAATCCAGTGCTTAGCTCCAATATCAAAAGTAAGGAGTGGAGAATTTAAACATACAGATTCTCCAAAACAAGACTTCAAAAAGGAAGGTCATGACTCAGATAGCTGCTCTGATATAACAGATAGCCAATTGTCGAGAAGTATTGGATCTTCCTCTGGTGCAGATTTATACTCTAGTTTACATTCTGGAGAAGCTAGCAGCAAGGAAGCAAGTTTCTCTGCTTCCTATTCACAGCTCAGCAATTCGTCATCTGAGGTTTACGAATCCGTAGAGAATGACGCTGCAAAAAACAATTATAGTGATATTCAAAGACAAGATTCGGTGAGCTCACAGAATAGTGCTCCTTGTTTATCTCCTAATTCTGTAATTACTGGTTCAGAAGCAACGACTATTGAGGAACTTCGTGCTGAAGCTAGGATGTGGGAGAGAAATTCCCACAAACTGATGGCTGATCTTGATCAGTTGAAGAAAGAGTTTTCAGATCAATCTGAAAACCAGGAAAGTTTACATGCTGCACTTTCAGCAGCGACTGCAGAATGTGATGGTTTGAGAAAAGAACTTGAGCAACTGAAATTGGTGACTGAGAAGTCAAAACAGAGACGGACAAGCATTGAGGATTTATCATATCAGGATGGGGAACCACACATCCTAAATGAATTGAAGGATGAACTGAACTTCCAAAAAGAAACCAATGCTGATTTAGCTCTGCAGCTAAAGAGAAGTCAAGAATCAAATATTGAGCTTGTGTCCGTTCTTCAGGAGCTAGAAGCAACTACAGAAAAGCAGAAACTTGAGATAGAGGAACTTTTGGCACGGCACCAAAAAGATGATGATATCGAAAATATTAATAAAGAAAACAAGAAATTGGTGCTTCAGTTAGAGCATGTGAAGGAATCAGAGAAGAATCTTCAATTGAAGGTTGGGGTTCTGGAGAGAAACTTGGAGGAAGCAAAACTTGATTTACAGAAATCTGAGGCCTCAAATCAAAGATTCCCTCAGGATACTGAAAGGCAATACGATAGTCTGCAAAATTCTGAGGAAAATGTGGGGTCCTTACATCATGTAAACATAAATCTAGTGAAAGAAATTGAAATGTTGAAAGAAAAAGTTCTGGAGTTAGAGAAGGATTGTAATGAATTGACAGATGAAAACATAGATCTCTTGTACAAGCTTAAGCAAGCAAATGGCGACTCTAAGGGGGGAAGTTTGGCTCTTAACTCCACAGGTGATGAGCTTCTATCTAAATCTTTTGTTAATTTTGGATTTGAATCTATGAAACACAGACATTCTGAACAAATTTCAGAAGAAAAAATTGAGAAAAGTCCTAATGTGATTGAGAATAACGATTTCAATAAAAAACCAGAGAGTATGAAATTTGAGCTGGAAATCATAGTCGAAGAGCTCAGTAAAGAATTAACTTTGAAAAAGCTGGAGATTGAAAAACTTGAGTCTAGCATTTTATCCAAAGATGACGAGATTAAGATCCTCGAAGGTTTGCATAACAAATTGCAAGCTAAGTATTCTGATCTCCAGGAAGAAAAAAATCAGATCGATGAAAAGATGATGGAAGTCATGCTTGGAGAAAGTGATGGCAGTTCTAAAGGCTTAAATGGTCTGCGAAATGAAGTAAAGGCGCTTAGCAACAGTGTGGATTTGCATGTTTCTGCAAACAAGCTTCTTGAAAGTAAATATTCAGAGCTTCAATTTAAAAAACAAGAACTTGATCTCCACGTATCTCAGATTGAACAGGAACGCATACGGTTGTCAGAAAGCATATCTGTTTTGGAATCTCAACTAAAATACATGATGGGCGAGAAGCAGTCAATTCGCCTTGAGTTAGAAGACTCTAAGTCTCATGCTGTGAGTCTCCAAGATGAGTTTGATAAACTGAGACTCGAGATAGAGACAGAAAATGTTGATTTGAAACAAATGTTGAATGACTTGCAAAACCAGTGTGCAAAGGCTCAAGATCAATGTGAGTACCTGCAGAGAGAAAAAACGAAGTTGGAGGCTGCAGCTGAGCATCTCGTTGAAGAACGAAATTTGCTTAAAAAATCAAATGGAGAGCTGAAGAACAAGAATTTCGAGTTGCATGAGGGTTATTTTCGCTTGGAATCGAAAGTGAAGGAACCGCTTGAAAGGTCTGCACAGTATTTCAGAAGAATTGAGGATTTCGAAGATTATCTCTCTCTTGGGTTGGAGGATTTCGCCTCAAAAGAAAGATTCCTATCTTCGGAATTAGATTCAATCGTTGAAGAGAACATAAAATACAAAGAGAAACTTGCTATGTTCGAAAGCTTGTCTAATGAAACATATTGGGAGAAGGCAACTGAAGCTCAAGAACTTCATGGAGCCGTTGTGCATCTGACCAAGCAACTTTCAGCAGCCAAGAAGGATTTCAACATCATGCGAATGGAATCTGATGAAAATTTAACGGCTCTGATTAGTGAACTTTCCGTGTCAAAACAAAACCAAGAGACACTGATAGCTGACAATGAAAAGTTACTGAAGCAGTTGGAAAATTACAAATCACTTGAAGTTGAACTTAAGAACTCTGTCAATGACCTTGAACAAAAGCTATATGTTTCTGAAAAAGAAAGACGGCAGAATGAGGAAAACTTAACTAACTTTAAAGTTCAGTTGCAAAAAACAGCCCATTTTCAGGATGAGGTTTTTGCATCGAGCAATAAGCTTGAACAGAAAACTGTTGCTGAATTAGAAGACAGTAAACAGAGCCGAATTGACCTGGAAGAAAAGCTTCTGAGAATAGGGAGTGGGTCAGTAGTGGAAGAGACATCATTTCCAGGGATTGATGATTTAAGAAATGAGCTCTGCGAGATTAAGAGAATGAACAGTAAGTACCAACAGAAACTGAAAATACTTGAGGAGGAGAAAGATGGGTGCCTAAAAAGATCTCAATCCCTTGAAGCTGAACTGGAACATTTAAAAGAAGAAAAACAGATCCAACGGGAGTCTAGCAGTGTAAGGATTCATAGTCTTTCCAAAACCAACGACAAAAACATGACCAGTAAAGACATGAAGCTTCTTAAAAATGGTGCGGTAAAGACAGTTGGTCAAAATCACAGTGGGAAGAAGAAGCCTAAGGACCCTAACAGCAATCAATCTCAATCTCAAATTAAGTATCGACAGGATGATAGTGGATGTGATATTGATGATGAAGGGCCTCACGTTCCTGAAGCTAAATCAATTTCAAGAATTCAGATGCTCGAAAAAGAACTTGCTGAGGCTTTGGAAGCAAACAAGAAATATGAAGATCAGCTGAGCAGGCTTGTTTCAGACACTCAAAACAACAAAGAAAATTCTCCCATATCAACAATTGAAGGCGATGTTGTAAAGACAAAGGAAGGATACGAAAGCCTTAACTCGGATCTAGAGGCGGAGTTAAAAGACATTCGTGAGCGGTACTTCCACATCAGCCTTAAGTATGCAGAAGTCGAGCATCAGCGAGAGGAACTTGTTATGAAGCTCAAAGCAGCCAAGAACAGCGGAAGAAGGTGGTTCTCATGA 3933 38.95 MFRLHRNRHAKSGEKFDFKFSNFKATQVPKGWDKLFVSVISEQTGKAIVRSSKAPVRNGSCQWTESLSDSIWVSQDEVSKEFEDCNFKLVVAMGSARSNILGETMVNMTNYIDSKSSSAVSLPLKKCNHGTILQVKIQCLAPISKVRSGEFKHTDSPKQDFKKEGHDSDSCSDITDSQLSRSIGSSSGADLYSSLHSGEASSKEASFSASYSQLSNSSSEVYESVENDAAKNNYSDIQRQDSVSSQNSAPCLSPNSVITGSEATTIEELRAEARMWERNSHKLMADLDQLKKEFSDQSENQESLHAALSAATAECDGLRKELEQLKLVTEKSKQRRTSIEDLSYQDGEPHILNELKDELNFQKETNADLALQLKRSQESNIELVSVLQELEATTEKQKLEIEELLARHQKDDDIENINKENKKLVLQLEHVKESEKNLQLKVGVLERNLEEAKLDLQKSEASNQRFPQDTERQYDSLQNSEENVGSLHHVNINLVKEIEMLKEKVLELEKDCNELTDENIDLLYKLKQANGDSKGGSLALNSTGDELLSKSFVNFGFESMKHRHSEQISEEKIEKSPNVIENNDFNKKPESMKFELEIIVEELSKELTLKKLEIEKLESSILSKDDEIKILEGLHNKLQAKYSDLQEEKNQIDEKMMEVMLGESDGSSKGLNGLRNEVKALSNSVDLHVSANKLLESKYSELQFKKQELDLHVSQIEQERIRLSESISVLESQLKYMMGEKQSIRLELEDSKSHAVSLQDEFDKLRLEIETENVDLKQMLNDLQNQCAKAQDQCEYLQREKTKLEAAAEHLVEERNLLKKSNGELKNKNFELHEGYFRLESKVKEPLERSAQYFRRIEDFEDYLSLGLEDFASKERFLSSELDSIVEENIKYKEKLAMFESLSNETYWEKATEAQELHGAVVHLTKQLSAAKKDFNIMRMESDENLTALISELSVSKQNQETLIADNEKLLKQLENYKSLEVELKNSVNDLEQKLYVSEKERRQNEENLTNFKVQLQKTAHFQDEVFASSNKLEQKTVAELEDSKQSRIDLEEKLLRIGSGSVVEETSFPGIDDLRNELCEIKRMNSKYQQKLKILEEEKDGCLKRSQSLEAELEHLKEEKQIQRESSSVRIHSLSKTNDKNMTSKDMKLLKNGAVKTVGQNHSGKKKPKDPNSNQSQSQIKYRQDDSGCDIDDEGPHVPEAKSISRIQMLEKELAEALEANKKYEDQLSRLVSDTQNNKENSPISTIEGDVVKTKEGYESLNSDLEAELKDIRERYFHISLKYAEVEHQREELVMKLKAAKNSGRRWFS* 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30334895 30342598 + CsaV3_3G036530.1 Csa03g03347 524252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03347 1310 MobiDBLite consensus disorder prediction 1186 1202 - -
Csa03g03347 1310 Coils Coil 491 518 - -
Csa03g03347 1310 Coils Coil 1256 1276 - -
Csa03g03347 1310 Coils Coil 713 733 - -
Csa03g03347 1310 MobiDBLite consensus disorder prediction 150 182 - -
Csa03g03347 1310 MobiDBLite consensus disorder prediction 1171 1185 - -
Csa03g03347 1310 Coils Coil 957 1008 - -
Csa03g03347 1310 MobiDBLite consensus disorder prediction 150 171 - -
Csa03g03347 1310 PANTHER PROTEIN MLP1-LIKE 931 1035 - -
Csa03g03347 1310 PANTHER PROTEIN MLP1-LIKE 1035 1310 - -
Csa03g03347 1310 PANTHER PROTEIN MLP1-LIKE 1 933 - -
Csa03g03347 1310 Coils Coil 748 828 - -
Csa03g03347 1310 Coils Coil 387 407 - -
Csa03g03347 1310 Coils Coil 600 620 - -
Csa03g03347 1310 Coils Coil 1284 1304 - -
Csa03g03347 1310 MobiDBLite consensus disorder prediction 238 257 - -
Csa03g03347 1310 Coils Coil 1208 1235 - -
Csa03g03347 1310 Coils Coil 628 655 - -
Csa03g03347 1310 Coils Coil 266 293 - -
Csa03g03347 1310 Coils Coil 308 335 - -
Csa03g03347 1310 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Csa03g03347 1310 PANTHER HEAVY CHAIN-LIKE PROTEIN, PUTATIVE-RELATED 1 933 - -
Csa03g03347 1310 PANTHER HEAVY CHAIN-LIKE PROTEIN, PUTATIVE-RELATED 931 1035 - -
Csa03g03347 1310 PANTHER HEAVY CHAIN-LIKE PROTEIN, PUTATIVE-RELATED 1035 1310 - -
Csa03g03347 1310 Coils Coil 414 462 - -
Csa03g03347 1310 Coils Coil 352 372 - -
Csa03g03347 1310 Coils Coil 1086 1127 - -
Csa03g03347 1310 MobiDBLite consensus disorder prediction 1121 1202 - -
Csa03g03347 1310 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 12 139 IPR019448 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03347 Csa-Chr3:30334895 Csa05g01566 Csa-Chr5:18312258 1.11E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03347 - - csv:101220815 2427.51