Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03353 ATGGGTACGCATGGCCGAAGCAGTGAGAAGAAAAGAGAGAAGACATCATCTTCTCGGACTCGCAGCAGAAGGTTCGACGACTCTGAATCTGATTCCGACGACTCGGATAGTCGGGATTCATCGCCGGTAACGAGGTCCCGGAAGCGCAGGGAAAAACGCGATCCTAGTAGAAGCAGTCACCGGAGTCGGCGGCGGAGCTCCTCACGTGGGCGGGATTCCGGTGATGATAGTTCAAATGATAGTTATGACAGTGATGATGGGGGTCGTAAGAAGAGTAAGTCTTCGAGAAAAGTTACCGAAGAGGAAATTAGCGAATATTTGGCCAAGAAAGCGCAGAAAAAGGCCTTACGAGTTGCTAAGAAATTGAAGTCACAGACGGTTTCTGGTTATTCTAACGATTCGAATCCATTTGGCGACTCGAATCTGAATGAAAAATTTGTTTGGCGGAAGAAAATTGAGCGTGATGTTACTCAAGGCGTGTCACTTGATGCCTTTTCAGTGAAGGCCGAGAAAAAAAGACAGAGAGAAAGAATGGCAGAGATTGAAAAGGTGAAGAAAAGGAGGGAGGAAAGGGCTCTTGAAAAAGCACAACATGAGGAAGAAATGGCATTGTTAGCTCGAGAACGTGCTCGTGCTGAATTTCAGGACTGGGAGAAAAAGGAAGAAGAGTTTCATTTTGATCAAAGCAAAGTCAGATCAGAGATAAGAGTTCGTGATGGGCGTTCAAAGCCTATAGATGTTCTGTCCAAGCAACTGAATGGGTCAGATGATTTTGATATAGTAATTAATGAGCCATACACTGTGTTCAAGGGATTGACTGTGAAAGAAATGGAAGAGCTTCGTGATGACATCAAAATGCATCTTGATATGGACAGGGCGACGCCTACACATATCGAGTATTGGGAGGCACTTCTGGTGGTTTGTGATTGGGAACTAGCTGAAGCTCGAAAGAAGGATGCTCTTGATAGAGCCAGAGTTCGTGGTGAGGAGCCTCCTCCTGAGTTGCTTGCAGAAGAAAGGGGCCTGCATTCTAGCATTGAAACAGATGTCAAAAATCTGCTGGAAGGGAAGACATATGGTGAATTGGAGGCATTACAATCTCAAATTGAGTCACAGATGCGAACTGGAACAGCAAAGGTGGTTGAATACTGGGAGGCTGTCCTAAAGCGCCTTCATATATACAAGGCCAAGGCTTGTTTGAAGGAAATTCATACGAAAAAACTGCATGAGCATCTTGTGCGTCTTGAGGAACCTTTAGAGGATAATGAAGAACAGATGGATCCAGAAGTCAAGATGGAAACCGATTATTCTTTGCAAGTGAAAGCTGATGATGATGAGCATGATATTGAAGAACCCCAAACATATTCACCAGATCTCCTCGTGGAAGAAGATAATCAAGAGGCAGGATCGTTTTCACCAGAACTTATGCATGGTGATGAAGATGAAGAGGCAGTGGATCCTGAGGAGGATAGGGCCATACTGGAACGTAAGCGTATTGCTGTCTTAGAAGAACAGCAGAGACGGGTGCAAGAAGCAATGGCTACGAAACCTGCTCCAGTAGAGGATAATTTCGAACTGAAAGCCTCGAAAGCCATGGGAGTCATGGAGGAAGGCGATGCAGTTTTTGGATCTGGGGCTGAAGTGAACTTGGACTCACAGGTTTATTGGTGGCATGATAAATATCGTCCAAGAAAACCAAAATACTTCAATCGGGTTCATACGGGATATGAATGGAACAAGTACAATCAGACTCACTATGATCATGACAATCCACCTCCAAAGATTGTGCAAGGATATAAGTTTAATATCTTCTATCCAGACCTTGTTGACAAGACAAAAGCTCCAACTTACACCATCGAAAAGGATGGAAACAGCAGCGAGACATGTATCATAAGGTTCCATGCTGGGCCACCTTACGAGGATATTGCATTTCGAATTGTAAACAAAGAATGGGAATACTCTCACAAGAAGGGGTTCAAGTGCACATTTGAGCGTGGAATTTTGCATGTATACTTCAACTTCAAACGATATCGTTATCGTAGGTAA 2046 44.23 MGTHGRSSEKKREKTSSSRTRSRRFDDSESDSDDSDSRDSSPVTRSRKRREKRDPSRSSHRSRRRSSSRGRDSGDDSSNDSYDSDDGGRKKSKSSRKVTEEEISEYLAKKAQKKALRVAKKLKSQTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVTQGVSLDAFSVKAEKKRQRERMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRVRDGRSKPIDVLSKQLNGSDDFDIVINEPYTVFKGLTVKEMEELRDDIKMHLDMDRATPTHIEYWEALLVVCDWELAEARKKDALDRARVRGEEPPPELLAEERGLHSSIETDVKNLLEGKTYGELEALQSQIESQMRTGTAKVVEYWEAVLKRLHIYKAKACLKEIHTKKLHEHLVRLEEPLEDNEEQMDPEVKMETDYSLQVKADDDEHDIEEPQTYSPDLLVEEDNQEAGSFSPELMHGDEDEEAVDPEEDRAILERKRIAVLEEQQRRVQEAMATKPAPVEDNFELKASKAMGVMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGNSSETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR* 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30357385 30362729 + CsaV3_3G036590.1 Csa03g03353 524258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03353 681 MobiDBLite consensus disorder prediction 465 488 - -
Csa03g03353 681 MobiDBLite consensus disorder prediction 50 67 - -
Csa03g03353 681 SMART CactinC_cactus_3 557 681 - -
Csa03g03353 681 Coils Coil 171 215 - -
Csa03g03353 681 MobiDBLite consensus disorder prediction 68 102 - -
Csa03g03353 681 MobiDBLite consensus disorder prediction 1 102 - -
Csa03g03353 681 MobiDBLite consensus disorder prediction 1 49 - -
Csa03g03353 681 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 1 681 - -
Csa03g03353 681 Pfam Conserved mid region of cactin 207 404 IPR018816 -
Csa03g03353 681 PANTHER BNAC05G02180D PROTEIN 1 681 - -
Csa03g03353 681 Pfam Cactus-binding C-terminus of cactin protein 557 681 IPR019134 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03353 K25058 - csv:101205416 1184.47