Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03354 ATGGTAACTATGAAGATCCCAACACTATTCTTGTTTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCACTTCTGCTATTCGCAGAAAACCTGCCCAAGGTGTGGCTCTTTTGAAGTTCCTTACCCTCTAAGTACCAATCCCAACTGTGGTGACTTAGATTATGCTCTTCGTTGTGATTCTCATTCAAAAAAACTCTACTTTGATGCACTCAATGGAAGTTCATATCCTATCCTCAAAATCAATGCTTCAAGTCAACGTCTGGTCATCCTACCATCTCCATGGGTTGCTGGCTCCTGTGTTACGCAAGACATGTTGGTTAGTGAAGGCTTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCAAACACAATTTTCCTCTTGAACTGTTCTCCTCGCCTGCTAGTCTCGCCGCTTAATTGCACTCCTTCGAGTCTCTGTCACCACTACTTGGCAAATTCAGGACGAGTCGATGGAGAAAGAGCATTTCAGTGTGCAAGTGTTCTTGACCCTTGTTGTACCTTCATCCCTGGTGGGATGCCCTCAGCTTATAAGATAAGGCTTCATAACTCAGGTTGTAGAGCATTCAGGAGTATCCTTCATCTGGATGTGGAAAAGCCACCAAATCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTACACCACCTGAACCAATCTGTAGAACTCAATCCGATTGCACTGGAGAGTCAGATTGTCTTCCTACTGGTGGTTCCAACAACCGTTCTCGCTGCCTTTGCAGAATGAGCTATTATTGGGATCATAATCTTGGAACATGCCTGAGAACCAATAAGAAGAGTTTGGTTAGACTCAGCATAAAGCTCTCGGTATGTTTGGTTTCCTTTTTCGTTCTAGCTGCTGTCATTGCCTTTATTACAGTCAGGAAGTCGAAAACTTTCAGTAAACAGGAAAAATTATATAAAGAAAGAGAAGAAAAGTTGAATCTAAGCCATGGTGGCAGACCAGCTAGGATGTTTCATCTGAAAGAGATGAAGAAAGCAACAAATGAATTTTCGAAAGACAGAGTCCTAGGCAGTGGTGGCTTTGGAGAGGTTTACAAAGGTGAACTTCAGGACGGGACTGTCGTAGCTGTGAAGTCGGCTAAAGTGGGTAATCTAAAGAGCACTGAACAAATACTCAATGAAGTCGGAATACTATCTCAAGTAAATCACAGGAATCTTGTGAAACTTATAGGTTGTTGCGTAGAAACTGAGCAACCATTGATGGTGTATGAATACATTTCCAATGGTACCTTGCATGACCATTTACATGGTAAGGTTCCTACTTTCTTGGATTGGAGAAAAAGGCTAAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATCTGCATTCAGCTGCATACCCTCCCATCTATCATAGAGATGTCAAGTCGACAAATATTCTTTTAGATGATAACTTCAATGCCAAAGTCTCAGATTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCATGTTTCAACTTGTGCACAGGGTACATTAGGTTACCTAGACCCAGAATACTATCGAAATTACCAGTTAACAGATAAAAGTGATGTGTATAGCTTTGGAGTTGTCCTCCTCGAGCTTTTAACCTCCAAGAAGGCCATAGATTTCACAAGAGATGAAGATGGTGTCAATCTAGCAATATATGTGATCCAACAAGTGCAAAATGGTGCATGCATTGACGCCATCGATAAACAACTTATCAGTGACAATCCGTCCAGCAAGATACTGATCAGTTTAAAGCATTTTATGGAGCTCGCACTCTCCTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTGCATGAAAGATGTACTCCAAGAACTTGAATACATAACTCAAATATTGGACAATCCAGAAACAATTGCTGAAGAGGGTAATCCTTAA 1917 41.26 MVTMKIPTLFLFGSYLFFLLFFSHFCYSQKTCPRCGSFEVPYPLSTNPNCGDLDYALRCDSHSKKLYFDALNGSSYPILKINASSQRLVILPSPWVAGSCVTQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLANSGRVDGERAFQCASVLDPCCTFIPGGMPSAYKIRLHNSGCRAFRSILHLDVEKPPNQWEEGLEIQWATPPEPICRTQSDCTGESDCLPTGGSNNRSRCLCRMSYYWDHNLGTCLRTNKKSLVRLSIKLSVCLVSFFVLAAVIAFITVRKSKTFSKQEKLYKEREEKLNLSHGGRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTVVAVKSAKVGNLKSTEQILNEVGILSQVNHRNLVKLIGCCVETEQPLMVYEYISNGTLHDHLHGKVPTFLDWRKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDNFNAKVSDFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSKKAIDFTRDEDGVNLAIYVIQQVQNGACIDAIDKQLISDNPSSKILISLKHFMELALSCLREKKVERPCMKDVLQELEYITQILDNPETIAEEGNP* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30364616 30366532 - CsaV3_3G036600.1 Csa03g03354 524259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03354 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 23 632 - -
Csa03g03354 638 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03354 638 SUPERFAMILY Protein kinase-like (PK-like) 328 623 IPR011009 -
Csa03g03354 638 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672|GO:0006468
Csa03g03354 638 Gene3D Transferase(Phosphotransferase) domain 1 422 634 - -
Csa03g03354 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 632 IPR045274 GO:0007166
Csa03g03354 638 Gene3D Phosphorylase Kinase; domain 1 315 421 - -
Csa03g03354 638 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247
Csa03g03354 638 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Csa03g03354 638 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03354 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Csa03g03354 638 CDD STKc_IRAK 352 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03354 Csa-Chr3:30364616 Csa06g00136 Csa-Chr6:890174 0 dispersed
Csa06g02887 Csa-Chr6:25086747 Csa03g03354 Csa-Chr3:30364616 9.29E-92 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78053 PF07714 PK_Tyr_Ser-Thr 2.40E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03354 - - csv:101221284 1284.63