Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03358 ATGGCTTCGTCGAAGGAAATGAAGAAGGAGAGAGCAGAGGTGGCGGCGAGGATTGCTGCTTCCGATCTGAGAGACATTAACAGAGAAGAAGAGAAGCAGGCAGCGGCGGCGCCGTCGAAGATAGAGAAAAATGCAACTGTGGAGGTCGTAGAGGCGGACCGGCCGACGGTGCAGGACCAGCAACAGAGACCTGGCGTGATTGGGTCAGTACTGAGGGCGGTGCACGACACATACGAACATGCTAAGGAAGCGGTGGTAGGAAAGAGCCATGAAGCGGAGGAGCGAAGCCGAGAAGCGAAGGATTGGTCGGCGGAGAAGGCAAGAGAGACAACGGAGGAGGCAAGGAGGAAAATGGACGAGTACGGAAGTGCTGTTGGGGGAAAGGCGAGGGAGACGAAGGAAGCTGTCGGAGAGACAGCAGCGGCGAGAAAAGCAGAGGAATACAAAAATTACACGGCAGAGAAAACAGCGGAGGCTAAAGGAAAGGCCGGCGAGTATAAGGACACTGCAGCAGAGAAGGCGAGGGAAGCGAAGGATGCTGCAGCGGAGAAGGCGAGGGAAGCGAAAGATGCAGCGGCGAGAAAAGCAGAGGAATACAAAAATTACACGGCAGAGAAAACAGGAGAGGCTAAAGGAAAGGCCGGCGAGTATAAGAACACTGCAGCGGAGAAGGCGAGGGAAGCGAAGGATGCTGCAGCGGAGAAGGCGAGGGAAGCGAAGGAAGCAGCGGAGAGAAAAGCAGAGGAATACAAAAATTACACGGCAGAGAAAACAGCGGAGGTTAAAGGGAAGGCCGGCGAGTATAAGGACACTGCAGCGGAGAAGGCGAGGGAAGCGATGGATGCTGCAGCGGAGAAGGCGAGAGAAGCGAAGGAGGCGGCGGCGAGAAAAGCAGAGGAATACAAAAATTACACTGCGGAGAAGACGGCGGAGGCTACAGGTAAGGCCGGCGAGTATAAGGACACTGCAGCGGAGAAGGCGAGGGAAACTAAGGATGCAGCAGCGAGAAAAGCAGGGGAATATAAAGATTACACAGCGGAGAAGACGGTGGAGGCTACAGAAGCCGCTAAAGGAAAGGCTGGTGAGTATAAGGATGCTGCAGCGGAGAAGGCGAGGGAAGCTAAGGATGCTGCAGCAAGAAAAGCAGGGGAATACAGAGATTACACAGCTGAGAAGGCGAGGGGAGCAACGGAAGCGGTGAAGGAGAAGGCTGGTGAGTACAAGGATTATGCAGCGGAGAAGGCAAATCAAGCGAAGGAAAAGGCGGCGGAGTATAAAGATTACACAGTGGATAAGGCGAAGGAGACGAAGGATGCGGCGGCAAGAAAAACAGTAGAGTATAAAGACTATGCAGAGGACAAAGCGAGGGATACGACAGATTACACGGCAGAGAAGGCGAAAGAAGGGAAGGACACGACAGTGAGCAAACTTGGGGAACTGAAAGATTCAGCAGCGGATGCTGCAAAGAGAGCAATGGAATACTTTACCGGAAAGAAAGAGGAAATCAAGGAGGGAGCATACGAAACAAAAGATGTCGCTAAGGAAAAGATGGGCGGATCAGAGGAGGATACAAGAAGGAAAATGGAGGATTTAAGGCTGCAGGGGGAAGGAAGGAGGGGCAGCACAGAAGCAGCAAAAGTCACACTTGAACGTAATAGAGGCCGTGGCGGGGAGGGAGCGGTGGTGGTAGATTTGGAGGAGACACGACCGGGTGCGCTGGCCTCGACTTTGAAGAAGGCAGACGACATGGCGGCACAGACGTTTAACGATGTGGGTCGAATTGACGACGAGGAGGGAGCTGTGCGCTCAAAGGATCGTCAAGGGAAGATGTGA 1833 53.74 MASSKEMKKERAEVAARIAASDLRDINREEEKQAAAAPSKIEKNATVEVVEADRPTVQDQQQRPGVIGSVLRAVHDTYEHAKEAVVGKSHEAEERSREAKDWSAEKARETTEEARRKMDEYGSAVGGKARETKEAVGETAAARKAEEYKNYTAEKTAEAKGKAGEYKDTAAEKAREAKDAAAEKAREAKDAAARKAEEYKNYTAEKTGEAKGKAGEYKNTAAEKAREAKDAAAEKAREAKEAAERKAEEYKNYTAEKTAEVKGKAGEYKDTAAEKAREAMDAAAEKAREAKEAAARKAEEYKNYTAEKTAEATGKAGEYKDTAAEKARETKDAAARKAGEYKDYTAEKTVEATEAAKGKAGEYKDAAAEKAREAKDAAARKAGEYRDYTAEKARGATEAVKEKAGEYKDYAAEKANQAKEKAAEYKDYTVDKAKETKDAAARKTVEYKDYAEDKARDTTDYTAEKAKEGKDTTVSKLGELKDSAADAAKRAMEYFTGKKEEIKEGAYETKDVAKEKMGGSEEDTRRKMEDLRLQGEGRRGSTEAAKVTLERNRGRGGEGAVVVDLEETRPGALASTLKKADDMAAQTFNDVGRIDDEEGAVRSKDRQGKM* 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30387572 30389757 + CsaV3_3G036640.1 Csa03g03358 524263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03358 610 MobiDBLite consensus disorder prediction 510 553 - -
Csa03g03358 610 MobiDBLite consensus disorder prediction 309 337 - -
Csa03g03358 610 MobiDBLite consensus disorder prediction 590 610 - -
Csa03g03358 610 Coils Coil 167 205 - -
Csa03g03358 610 PANTHER DAUER UP-REGULATED-RELATED 400 599 - -
Csa03g03358 610 PANTHER DAUER UP-REGULATED-RELATED 379 460 - -
Csa03g03358 610 PANTHER DAUER UP-REGULATED-RELATED 355 422 - -
Csa03g03358 610 PANTHER DAUER UP-REGULATED-RELATED 264 385 - -
Csa03g03358 610 PANTHER DAUER UP-REGULATED-RELATED 1 262 - -
Csa03g03358 610 PANTHER DAUER UP-REGULATED-RELATED 210 313 - -
Csa03g03358 610 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 355 422 - -
Csa03g03358 610 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 264 385 - -
Csa03g03358 610 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 1 262 - -
Csa03g03358 610 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 400 599 - -
Csa03g03358 610 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 379 460 - -
Csa03g03358 610 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 210 313 - -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 387 424 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 159 188 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 178 216 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 210 239 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 459 498 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 312 341 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 229 265 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 280 312 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 426 458 IPR004238 -
Csa03g03358 610 Pfam Late embryogenesis abundant protein 342 385 IPR004238 -
Csa03g03358 610 Coils Coil 218 260 - -
Csa03g03358 610 MobiDBLite consensus disorder prediction 83 249 - -
Csa03g03358 610 Coils Coil 273 307 - -
Csa03g03358 610 Gene3D - 268 319 - -
Csa03g03358 610 Gene3D - 217 267 - -
Csa03g03358 610 Gene3D - 445 501 - -
Csa03g03358 610 Gene3D - 163 216 - -
Csa03g03358 610 Gene3D - 340 386 - -
Csa03g03358 610 Gene3D - 387 433 - -
Csa03g03358 610 MobiDBLite consensus disorder prediction 510 564 - -
Csa03g03358 610 Coils Coil 104 124 - -
Csa03g03358 610 MobiDBLite consensus disorder prediction 591 610 - -
Csa03g03358 610 MobiDBLite consensus disorder prediction 313 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03358 - - - csv:101221754 952.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1071 . . . . . . . . . Cmo14g00246 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1225 Cone19ag1211 . . . Cme04g02451 . . Bda03g01693 . . . . . . . . . Cma14g00255 . Car14g00233 Cpe03g00222 . Bhi11g02005 Tan08g1798 . . Hepe05g0322 . . Cla10g01859 Cam10g1914 Cec10g1969 Cco10g1942 Clacu10g1931 Cmu10g2675 Cre10g2063 Lsi03g01955 Csa03g03358 Chy04g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007741 1 4 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31