Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03360 ATGGAATGGGCTACAGGAAGTTTCAGACCGTTTGTTTCTCGAGCTCCTGAATCTTCGTTTGGGTTTCTTTATAACTATAATCTTGAACAATTTCAGGTTTCAGGCGTAGATGTGAAGCATTCGGCCATGGCGGGGGCGTCGGAGACAGTGCTGCAAGGGTTGGTTCCAGGGATGGATATGAACAGCTACGGGAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTTGAGTCGCTCGAACGAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGTAAACAGAAGCTGTCAAAGGAACTTGGTCTGCAGCCTCGTCAGATCGCAGTTTGGTTTCAGAACCGTCGTGCAAGGTGGAAGGCAAAGCAACTCGAGCATCTCTATGATACTCTCAAACAGGAGTTTGATGCCATTTCTAGAGAGAAACATAAGCTTCAAGAAGAGGTAATGAAGCTGAAGAGCATGCTGAGAGAGCTTCAAGCTGCAAGGAACCAAGTGTCAACGGTGTACACCGACTTGTCGGGGGAGGAGACAGTGGAAAGCACCTCGGTAGGAGCTGGCTGCTCGAGCAAGCCAAGACCGGTAGCTGCAGCAGCAGCCGTGGCAGCGGCAAACCACTACACGACGCCACCAGAGCAATGCAACTATGTGTTTAACACTGAGGAGTACAACCCTATGTCCCCAGCTTTCTGGGGTTCTCTCCCATCCTCTTACCATCCCCAGTAG 729 51.3 MEWATGSFRPFVSRAPESSFGFLYNYNLEQFQVSGVDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVESTSVGAGCSSKPRPVAAAAAVAAANHYTTPPEQCNYVFNTEEYNPMSPAFWGSLPSSYHPQ* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30395800 30399212 - CsaV3_3G036660.1 Csa03g03360 524265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03360 242 CDD homeodomain 68 124 IPR001356 GO:0003677
Csa03g03360 242 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Csa03g03360 242 Pfam Homeobox associated leucine zipper 123 157 IPR003106 GO:0006355|GO:0043565
Csa03g03360 242 Gene3D - 67 127 - -
Csa03g03360 242 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Csa03g03360 242 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Csa03g03360 242 SUPERFAMILY Homeodomain-like 57 125 IPR009057 -
Csa03g03360 242 Coils Coil 63 83 - -
Csa03g03360 242 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Csa03g03360 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 202 IPR045224 GO:0003700
Csa03g03360 242 Coils Coil 115 166 - -
Csa03g03360 242 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Csa03g03360 242 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 202 - -
Csa03g03360 242 SMART HOX_1 65 127 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03360 Csa06g02646 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03360 Csa-Chr3:30395800 Csa03g03923 Csa-Chr3:34379311 5.52E-29 dispersed
Csa06g03219 Csa-Chr6:27254198 Csa03g03360 Csa-Chr3:30395800 5.27E-28 transposed
Csa03g03360 Csa-Chr3:30395800 Csa06g02646 Csa-Chr6:23270808 2.10E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31333 PF00046 Homeodomain 1.90E-17 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03360 - - csv:101221983 452.981