Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03362 ATGTTTTCAGGCATGAATTCGTCAATGCTGGGATTGGAATTACCACTTCATCAAAACCCAACAAATCCCACTAATCCTCACCAATTACATCACCCTCCAATGGTATCTTATGTCCAACATGACCCCCATCATCACCAACAACCGCCGTCGGTCTCCGTGAAATACCCTTTTCCGACAAAGGCTAAGCCACAGCAGTCGAATCTCAGTGACGACGAGGAGCAGGGGTTCGCGGCGGATGACAGTAATGGAGATGGCAAGAAGAAAATCTCGCCGTGGCAGAGGATGAAATGGACGGATATGATGGTTCGGCTGTTGATTACGGCGGTGTTCTATATCGGCGATGAAGGTGGGTCGGAGCCGGTGGACCATGTCGGGAAGAAAAAACCAGTGGGGTTACTGCAAAAGAAGGGGAAATGGAAATCGGTATCCAGAGCAATGATGGAAAAAGGATTCTACGTTTCACCACAGCAATGTGAAGACAAATTCAACGATTTAAACAAAAGATACAAACGAGTTAACGATATTTTAGGGAAGGGAACAGCCTGCAAAGTAGTAGAGAATCAAACATTACTCGATTCAATGGAATTAACACCAAAAACAAAAGAAGAAGTACGAAAATTACTCAATTCTAAACATCTTTTCTTCAGAGAAATGTGCGCTTACCACAACACTTGCCGTCACAGCACCACCCACCCCTCGCCGGACGCAGCAACAGAACCATCCCACCTTCCACAACAACAACAGCAACAGCAACTATGCTTCCACGCCACAGACACGACAACCTCCGCCAGTATAGCAGCCGGCGAGGGTTCAAAAAGCGGAGATGAGGAGGAAGAGGAGGAGGAAGAGGAGGAATCGGAAGAGGAGGAAGAGGATGAGGAAACAGAAGGGAGACAGGAAGAAGAGGAGGAAACGGAATCGAGGAAGAGGGCGAGGAAAGGGGGGATGATAACGGCTGGGATGCAGCAGTTGAGTGCGGAGGTGATGGGAGTTATATCGGACGGGGGGAGGAGTCCATGGGAGAAGAAGCAATGGATGAAGAGCCGACTGATTCAGCTTGAAGAGCAGCAAGTGAGCTGGCAAACGCAGGCATTCGAGCTGGAGAAACAGAGGCTGAAATGGGTGAAGTTCAGGAGCAAGAAGGAGAGGGATATGGAGAGAGCGAAGCTGGAGAATGAGAAGAGAATGCTGGAAAACGAGAGGATGATGCTGATGGTAAAGAAGAACGAGTTGGATTTGATGGGTATGCAACATTATCAGCAGCAACAGCAGCAGCATTCGTCGAACAAGCGAGGGGATCCATCGTCGATTACAGGATGA 1320 48.64 MFSGMNSSMLGLELPLHQNPTNPTNPHQLHHPPMVSYVQHDPHHHQQPPSVSVKYPFPTKAKPQQSNLSDDEEQGFAADDSNGDGKKKISPWQRMKWTDMMVRLLITAVFYIGDEGGSEPVDHVGKKKPVGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQTLLDSMELTPKTKEEVRKLLNSKHLFFREMCAYHNTCRHSTTHPSPDAATEPSHLPQQQQQQQLCFHATDTTTSASIAAGEGSKSGDEEEEEEEEEESEEEEEDEETEGRQEEEEETESRKRARKGGMITAGMQQLSAEVMGVISDGGRSPWEKKQWMKSRLIQLEEQQVSWQTQAFELEKQRLKWVKFRSKKERDMERAKLENEKRMLENERMMLMVKKNELDLMGMQHYQQQQQQHSSNKRGDPSSITG* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30416240 30417559 + CsaV3_3G036680.1 Csa03g03362 524267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03362 439 PANTHER F16F4.11 PROTEIN-RELATED 4 436 - -
Csa03g03362 439 MobiDBLite consensus disorder prediction 273 301 - -
Csa03g03362 439 MobiDBLite consensus disorder prediction 12 29 - -
Csa03g03362 439 Coils Coil 380 407 - -
Csa03g03362 439 Pfam Myb/SANT-like DNA-binding domain 94 220 IPR044822 -
Csa03g03362 439 MobiDBLite consensus disorder prediction 12 89 - -
Csa03g03362 439 MobiDBLite consensus disorder prediction 416 439 - -
Csa03g03362 439 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 4 436 - -
Csa03g03362 439 MobiDBLite consensus disorder prediction 227 268 - -
Csa03g03362 439 MobiDBLite consensus disorder prediction 227 316 - -
Csa03g03362 439 Coils Coil 272 304 - -
Csa03g03362 439 Gene3D - 97 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01666 Csa-Chr1:12426358 Csa03g03362 Csa-Chr3:30416240 3.50E-15 dispersed
Csa03g03362 Csa-Chr3:30416240 Csa04g01409 Csa-Chr4:14118466 3.99E-83 dispersed
Csa03g03362 Csa-Chr3:30416240 Csa06g00527 Csa-Chr6:4466067 4.46E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31334 PF13837 Myb_DNA-bind_4 2.60E-21 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03362 - - csv:101222223 798.505