Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03363 ATGGCTTCCTGTGACGACGACTTCTCTCTCCTCAACGACGATCACCACCACCAACACCACCACCAATCCACTACCAACCACCACCATGTACCAACGCCTCACCACATCCATCAATCCTACACATCTCACCGCTTCACGCCTCGATCGTCTTCCGTTCACGCGCCGCCACAGCCCTCTCCCAATCAACCGGCTCAACCGATTCTTGCACCCTCCGGAAGTCCGAAGAAGATCGGTGTCCCGATAGACGAGGAAGAGGAGGAGGAGGATACGGAGGATTATGGTGATCCTGCTTTCTGCTCCAGTTCGTTTGATAATGGAGATCCCAATCGGCTTGGTGTTGGTGTTGATGTGCGGGTTGAGAAGAGGAAGGATCAGTCGGACGAGCTTGCGGAGGAAGGAGGTTCTTATACTAGTTATAAAAGAGCGAAACCTTCCTCCAGCGGCGGAGAATACAGGAAGGATCGAGAGGAGTGGAGTGATGCGGCTATTTCCTGCCTTCTGGATGCGTATACCGAGAAATTTACGCAGCTGAATAGGGGGAATTTGAGGGGGAGGGATTGGGAGGAAGTGGCTGCAACTGTCAGTGAACGGTGCGAGAAGCAGAGCAAGAGCGTAGAGCAGTGTAAGAATAAGGTGGACAACTTAAAGAAGAGGTATAAGTTAGAGAGACATAGGATGAGTAACGGTGGCGTCTCGATCAGTCACTGGCCTTGGTTTAAGCAGATGGAGCAAATTGTTGGAAATTCTTTGACAATGAAGGTTGTTTCTGATGAGGATCGGAGTGTTGCCTCCTCAGGGAATACTCCGAGGATATCAAAGAGGTACGTTCTTCCCACACCCAATACTGCTGGTCAAATGAATAACATAAAACCCAAAGCAGTTTCCAGTCCAAGGTGGCGAAGAGTCGTCTTTAAAATCAGTGGTACAGCTCTTGCAGGGACTGGTCCTAACAACATCGATTCAAAGGTTGCAATGGCAATTGCCAGAGAAGTTGTAATGGCTTGTCGCCTGGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAACTTCTTCTGTGGAGACTCTTGGGTGACTACAACAGGTTTAGATAGATGTACAGCATACCAAATTGGTATGATGGCTACTGTGATGAATTCAATTCTTCTTCAGTCAGCAATAGAGAAGATGGGAGTTCAGACTCGTGTCCAATCTGCATTTATGCTTCAGGAGGTTGCTGAACCATACAGTAGGCAACGTGCTATAAGGCATCTTGAGAAAGGCAGAGTAGTTATATTTGGTGGCATTGGTGCTGGCACTGGAAATCCCCTATTTTCCACTGATACAGCTGCGGCTCTTCGAGCTTCTGAGATTCATGCCGAGGCAGTTCTTAAGGGTACGAATGTTGATGGCGTGTATGACTGCAATTCACAAGACAACAATTTTACTTTCAAGCACATATCTTTCAGGGAGTTGGTATCAAGAGGCGCCATTAGCATGGACATGACCGCATTAACTTTCTGTGAAGAGAACAACCTTCCTGTTGTCGTCTTTAATCTTCTTGAGCCTGGAAATATCTCAAAAGCATTATGTGGAGAGCAAGTGGGTACACTGATTGATCAAAATGGAAGAATTAGCTAG 1617 47.56 MASCDDDFSLLNDDHHHQHHHQSTTNHHHVPTPHHIHQSYTSHRFTPRSSSVHAPPQPSPNQPAQPILAPSGSPKKIGVPIDEEEEEEDTEDYGDPAFCSSSFDNGDPNRLGVGVDVRVEKRKDQSDELAEEGGSYTSYKRAKPSSSGGEYRKDREEWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVSERCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNGGVSISHWPWFKQMEQIVGNSLTMKVVSDEDRSVASSGNTPRISKRYVLPTPNTAGQMNNIKPKAVSSPRWRRVVFKISGTALAGTGPNNIDSKVAMAIAREVVMACRLGVEVAIVVGGRNFFCGDSWVTTTGLDRCTAYQIGMMATVMNSILLQSAIEKMGVQTRVQSAFMLQEVAEPYSRQRAIRHLEKGRVVIFGGIGAGTGNPLFSTDTAAALRASEIHAEAVLKGTNVDGVYDCNSQDNNFTFKHISFRELVSRGAISMDMTALTFCEENNLPVVVFNLLEPGNISKALCGEQVGTLIDQNGRIS* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30418864 30423000 + CsaV3_3G036690.1 Csa03g03363 524268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03363 538 Hamap Uridylate kinase [pyrH]. 297 532 IPR015963 GO:0005737|GO:0006221|GO:0033862
Csa03g03363 538 Gene3D - 290 537 IPR036393 -
Csa03g03363 538 MobiDBLite consensus disorder prediction 53 67 - -
Csa03g03363 538 SUPERFAMILY Carbamate kinase-like 298 531 IPR036393 -
Csa03g03363 538 Pfam Amino acid kinase family 301 511 IPR001048 -
Csa03g03363 538 Coils Coil 198 225 - -
Csa03g03363 538 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 538 IPR011817 GO:0006221|GO:0009041
Csa03g03363 538 MobiDBLite consensus disorder prediction 16 154 - -
Csa03g03363 538 MobiDBLite consensus disorder prediction 114 130 - -
Csa03g03363 538 CDD AAK_UMPK-PyrH-Ec 300 532 IPR015963 GO:0005737|GO:0006221|GO:0033862
Csa03g03363 538 Gene3D - 158 221 - -
Csa03g03363 538 MobiDBLite consensus disorder prediction 35 52 - -
Csa03g03363 538 Pfam Myb/SANT-like DNA-binding domain 155 245 IPR044822 -
Csa03g03363 538 PANTHER URIDYLATE KINASE 1 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03363 Csa-Chr3:30418864 Csa06g02792 Csa-Chr6:24339325 8.14E-95 dispersed
Csa03g03363 Csa-Chr3:30418864 Csa07g00470 Csa-Chr7:3405449 7.31E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31335 PF00696 AA_kinase 7.10E-25 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03363 - - csv:101222460 1048.11