Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03364 ATGATGATGATGGAGAAGGAGGAGAAGGTGGGGATGAAGATTTTCCATTCAGCAATAGTTTTCTTTTTCTCTCTTACCCTTTTGGTTTCTCCTTCTTTCTCTTTAGATGATGATTCTTCTGCTCTAACTCGTTTCCGTCTTCAAGCTGATTCCCATGGCGGTTTACTAAGAAATTGGACTGGTTCTGATCCTTGTGGTTCTTCATGGCGTGGAGTTCAGTGCTCTGTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAATTTACGAGGCCCCATTGAGTCTCTAGCGCCGCTTGATCAGCTTCGCCTTCTTGACCTCCATGACAACCGTTTGAATGGAACCATTTCACCGCTTGTTAACTGTACGAATCTTAAGCTGTTGTATCTTTCCGGTAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCACTGAGGCGACTTCTCCGACTGGACTTGTCGGATAACAACATCCGCGGTGGAATTCCTGAGGATATTTCTAAATTGTCTCGGCTTCTCACGTTACGTTTGCAGAACAATGTCCTCTCCGGTACGGTGCCCGATCTCTCTGTTTCGCTTGTGAATCTCACTGAACTTAATTTAACAAACAATGAACTGTACGGGCGGTTGCCGGACGGGATGATGAAGAAATTCGGTGAGAAGAGTTTCACCGGAAACGAAGGGGTTTGTGGGTCGAGTCCATTACCGATCTGTTCAGTTACTGGTTCGGCGCCGTCGTCGGATCCTACTAGAACGGTACCGTCAAATCCAAGTTCATTGCCGCAAAACCCTATTATTGGTCCGAATAGTAAAGAATCTCGAAAAGGGCTGAGCCCTGGCGTGATTGTCGCGATTGTGATCGCCAATTGCGTTGCATTGCTTGTGATTATCTCGTTCATCGTTGCGTATTACTGCGCTCGTGATCGTGATCGGAGTTCAAGCTCCATGACCGGAAGCGAAAGCGGAAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAAGTATACGCTAATGGCGGTGGTGACAGTGATGGCACTAACGCTACAGACAGAAGCAAGCTAGTGTTCTTCGATTGGAAGAAGCAATTCGAACTTGAAGATTTGCTGAGAGCATCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGAACGGTTTACCGGGCAGTTCTTGACGACGGTTGTACGGTAGCTGTGAAGAGGTTGAAAGATGCAAACCCGTGTCCGAGGAAGGATTTTGAGCAGTATATGGATGTGATCGGAAAGCTGAAACATTCAAATATCGTGAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCAAACGGGAGTTTACATTCTCTTCTCCACGGAAACCGAGGCCCAGGGAGAATTCCGTTGGATTGGACGACAAGGATTAGTTTAGTTCTTGGAGCTGCTCGTGGTTTAGCAAGAATCCATGGTGAATACAGTGCTTCAAAGATCCCCCATGGGAACGTCAAATCTTCCAACGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTGTCTCTACTTCTCAACCCTGTCCATGCCATTGCAAGGTTAGGGGGTTACAAGGCCCCAGAGCAAGACGAGACAAAACGTCTATCTCAAAAAGCAGATGTTTATAGCTTCGGTGTTTTATTGCTTGAAGTCTTAACGGGTCGTGCACCATCTCTCTACCCATCGCCTTCGAACCCGCGAAGCGACGACGAAGAGCAACCAGTGGACCTCCCGAAATGGGTTCGATCTGTGGTGAAGGAAGAGTGGACAGCTGAGGTTTTTGATCCAGAGCTATTGAGGTACAAGAACATTGAGGAGGAGCTTGTGTCTATGCTTCATGTTGGGTTGGCTTGTGTTCTTCCTCAGCCTGAGAAGAGACCAACAATGGCGGAAGTAGTAAAGATGATAGAAGATATTAGGGTCGAGCAGTCCCCGCTCGGAGAAGATTACGACGAATCACGTAATTCGCTTTCACCTTCCTTAGCCACCACAGAAGATGGTATGTAA 2052 46.93 MMMMEKEEKVGMKIFHSAIVFFFSLTLLVSPSFSLDDDSSALTRFRLQADSHGGLLRNWTGSDPCGSSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRLLDLHDNRLNGTISPLVNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDISKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTELNLTNNELYGRLPDGMMKKFGEKSFTGNEGVCGSSPLPICSVTGSAPSSDPTRTVPSNPSSLPQNPIIGPNSKESRKGLSPGVIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHSNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSNPRSDDEEQPVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVVKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGM* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30424877 30428155 - CsaV3_3G036700.1 Csa03g03364 524269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03364 683 MobiDBLite consensus disorder prediction 242 271 - -
Csa03g03364 683 MobiDBLite consensus disorder prediction 242 276 - -
Csa03g03364 683 Gene3D Ribonuclease Inhibitor 33 99 IPR032675 -
Csa03g03364 683 Gene3D Ribonuclease Inhibitor 100 246 IPR032675 -
Csa03g03364 683 MobiDBLite consensus disorder prediction 313 348 - -
Csa03g03364 683 CDD STKc_IRAK 380 654 - -
Csa03g03364 683 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Csa03g03364 683 Gene3D Transferase(Phosphotransferase) domain 1 450 672 - -
Csa03g03364 683 MobiDBLite consensus disorder prediction 665 683 - -
Csa03g03364 683 MobiDBLite consensus disorder prediction 659 683 - -
Csa03g03364 683 PANTHER LRR RECEPTOR-LIKE KINASE 24 674 - -
Csa03g03364 683 Gene3D Phosphorylase Kinase; domain 1 347 449 - -
Csa03g03364 683 ProSiteProfiles Protein kinase domain profile. 374 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03364 683 Pfam Protein kinase domain 378 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03364 683 SUPERFAMILY L domain-like 37 216 - -
Csa03g03364 683 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515
Csa03g03364 683 MobiDBLite consensus disorder prediction 313 328 - -
Csa03g03364 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 674 - -
Csa03g03364 683 SUPERFAMILY Protein kinase-like (PK-like) 378 651 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03364 Csa-Chr3:30424877 Csa06g01121 Csa-Chr6:9313912 1.09E-151 dispersed
Csa04g00935 Csa-Chr4:6987610 Csa03g03364 Csa-Chr3:30424877 4.63E-104 dispersed
Csa05g02630 Csa-Chr5:27427391 Csa03g03364 Csa-Chr3:30424877 9.37E-73 dispersed
Csa05g02631 Csa-Chr5:27428234 Csa03g03364 Csa-Chr3:30424877 5.16E-91 dispersed
Csa06g02957 Csa-Chr6:25603384 Csa03g03364 Csa-Chr3:30424877 3.07E-103 dispersed
Csa03g03364 Csa-Chr3:30424877 Csa01g02093 Csa-Chr1:18117705 1.34E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78054 PF00069 Pkinase 4.10E-33 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03364 - - csv:101206843 1258.82