Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03370 ATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGAGAACCTCTCTTGGTGAGTCCTGGAGAGGAGAAGATACTGCATCTGTCGCAGGCCTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACCGGTTGTCCTATATGTCAAGGTTGGCAATCAAAAGCTTGTTCTGGGGACACTATCCTCGGAGAAATTCCCACAAGTGTCTTTTGATCTTGTGTTTGACAAAGAATTTGAGCTATCTCATAATTGGAAAAACGGAAGTGTGCACTTTACAGGATATACATCTCTCCTTCCAGAAGAGGAGGAATCTACTTATACTGATTCTGAAGAGGATTTTCCTCTAGCTGTCACGGACAATGGAAAGCCAGAGCCAGAGCCAGAGCCTAAGAAAGATGCAAAGCCTGATACTTCTGGAACCAAGAAAAAAGTGCAGATTGTAGAACCAAGCAAAGTTGCCTCTAATTCAAATATTGACAGTAAGAAGAATAAAGACAGTTCTGATGAAGATGATGACGAGGATGAGGAGAGCACAGATAATGAGAATGAAAATGGAGGTGAAGAAGATGATAGCGATGATGATGAAAATGAGTCTTCTGGAGTCGATAGTGAAGACTCTGATGAGGACTCGGATGACAGTTTGGAAGAGGATGAGCAGACACCAAAAAAGGCTGAAGCAAGCAAGAAGAGACCTTTAGATTCTGCTAATAAAACGCCTGCTCCCGATAAGAAGGCAAAACTCGTCACTCCTCAGAAAACTGATGGCAAGAAAGGGGTTGCTCATGTAGCTACTCCTCATCCTTCAAAGAAGGCCGGGAAAATGGCCGCTGCTAATGACAAAAATAAACAGCAGACTCCCAAATCAGCAAATGCCGCATTCTCTTGCAAAACTTGCAACAGGACATTCGGCTCAGAAACTGCGTTACAATCCCACACAAAAGCCAAGCACACAGCCGATAAGTGA 957 43.99 MEFWGAEVKVGEPLLVSPGEEKILHLSQACLGESKSKGSEPVVLYVKVGNQKLVLGTLSSEKFPQVSFDLVFDKEFELSHNWKNGSVHFTGYTSLLPEEEESTYTDSEEDFPLAVTDNGKPEPEPEPKKDAKPDTSGTKKKVQIVEPSKVASNSNIDSKKNKDSSDEDDDEDEESTDNENENGGEEDDSDDDENESSGVDSEDSDEDSDDSLEEDEQTPKKAEASKKRPLDSANKTPAPDKKAKLVTPQKTDGKKGVAHVATPHPSKKAGKMAAANDKNKQQTPKSANAAFSCKTCNRTFGSETALQSHTKAKHTADK* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30449522 30454715 - CsaV3_3G036760.1 Csa03g03370 524275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03370 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 318 IPR013087 -
Csa03g03370 318 MobiDBLite consensus disorder prediction 214 238 - -
Csa03g03370 318 Pfam C2H2-type zinc finger 290 314 - -
Csa03g03370 318 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
Csa03g03370 318 MobiDBLite consensus disorder prediction 121 139 - -
Csa03g03370 318 Gene3D Nucleoplasmin core domain 1 96 - -
Csa03g03370 318 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 313 - -
Csa03g03370 318 SMART c2h2final6 291 314 IPR013087 -
Csa03g03370 318 MobiDBLite consensus disorder prediction 166 213 - -
Csa03g03370 318 MobiDBLite consensus disorder prediction 99 287 - -
Csa03g03370 318 ProSitePatterns Zinc finger C2H2 type domain signature. 293 314 IPR013087 -
Csa03g03370 318 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03370 Csa-Chr3:30449522 Csa06g01271 Csa-Chr6:10664496 4.62E-36 dispersed
Csa03g03370 Csa-Chr3:30449522 Csa06g01269 Csa-Chr6:10657646 1.34E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31336 PF17800 NPL 8.70E-14 CL0055 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03370 - - csv:101207572 494.967